Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s14.

Sample reads: 124,246. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5366.13 43191.73
2. MT-ATP6 MT-ATP6 3065.10 24670.84
3. MT-ND5 MT-ND5 2840.78 22865.30
4. gga-mir-3527 gga-mir-3527 2240.30 18032.07
5. EEF1A EEF1A 2079.65 16739.00
6. MT-CO1 MT-CO1 1910.18 15374.95
7. MT-ND3 MT-ND3 1810.26 14570.70
8. MT-CYB MT-CYB 1808.30 14554.92
9. MT-ND4 MT-ND4 1535.98 12363.03
10. GAPDH ENSGALG00000014442 1425.29 11472.09 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. MT-ND1 MT-ND1 1293.04 10407.62
12. gga-mir-3533 ENSGALG00000027736 1172.56 9437.88 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
13. NME2 ENSGALG00000002932 891.42 7175.00 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. PPIA ENSGALG00000028600 784.64 6315.53 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
15. RPL5 ENSGALG00000005922 755.25 6078.97 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. RPL8 ENSGALG00000016232 743.50 5984.40 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
17. RPL26 RPL26 645.54 5195.92
18. RPS3 ENSGALG00000017330 633.79 5101.35 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
19. RPL7 ENSGALG00000035252 575.01 4628.23 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
20. RPL27A ENSGALG00000005948 513.30 4131.53 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
21. RPS7 ENSGALG00000016392 506.44 4076.31 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
22. ENO1 ENSGALG00000002377 502.52 4044.76 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
23. RPL7A ENSGALG00000003197 502.52 4044.76 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
24. RPS20 ENSGALG00000014432 493.71 3973.85 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
25. EIF4G2 ENSGALG00000005587 484.89 3902.86 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
26. RPL23 ENSGALG00000001634 470.20 3784.62 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
27. STMN1 ENSGALG00000001475 437.87 3524.39 stathmin 1 [Source:NCBI gene;Acc:396057]
28. RAN ENSGALG00000002569 435.91 3508.62 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
29. RPL15 ENSGALG00000011290 432.97 3484.95 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
30. CIRBP ENSGALG00000030918 428.08 3445.60 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
31. RPL31 ENSGALG00000016775 426.12 3429.82 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
32. RPS6 ENSGALG00000015082 426.12 3429.82 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
33. RPS10 ENSGALG00000002813 423.18 3406.16 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
34. RPS23 ENSGALG00000015617 411.42 3311.50 ribosomal protein S23
35. TMSB4X ENSGALG00000026383 407.50 3279.95 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
36. RPS4 RPS4 391.83 3153.82
37. RPL18A 389.87 3138.05 ribosomal protein L18a
38. RPS11 ENSGALG00000017299 376.16 3027.69 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
39. RPL27 ENSGALG00000002837 367.34 2956.70 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
40. ENSGALG00000028992 ENSGALG00000028992 360.48 2901.49
41. SNRPG ENSGALG00000028409 355.59 2862.13 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
42. RPL14 ENSGALG00000043379 352.65 2838.46 ribosomal protein L14
43. RPS16 ENSGALG00000026490 352.65 2838.46 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
44. RPS15A ENSGALG00000006771 350.69 2822.69 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
45. RPS29 ENSGALG00000012229 347.75 2799.02 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
46. H3-IX H3-IX 340.89 2743.81
47. RPS24 ENSGALG00000004871 333.06 2680.78 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
48. H2AFZ ENSGALG00000014023 331.10 2665.01 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
49. RPS12 ENSGALG00000013990 329.14 2649.23 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
50. EEF1B2 ENSGALG00000008590 326.20 2625.57 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
51. RPSA 316.40 2546.69 ribosomal protein SA
52. RPL32 ENSGALG00000027142 315.42 2538.80 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
53. MDK ENSGALG00000008367 314.44 2530.91 midkine [Source:NCBI gene;Acc:423196]
54. ENSGALG00000018384 ENSGALG00000018384 313.47 2523.11
55. SLC25A6_1 ENSGALG00000016691 309.55 2491.55 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
56. RPS27A ENSGALG00000036790 296.81 2389.01 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
57. FKBP4 ENSGALG00000014331 294.85 2373.23 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
58. RPL35A ENSGALG00000007611, ENSGALG00000041230 293.87 2365.35 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
59. RPL21 ENSGALG00000027035 285.06 2294.43 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
60. RPL10A ENSGALG00000002644 275.26 2215.55 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
61. HMGN5 ENSGALG00000007131 270.36 2176.11 high mobility group nucleosome binding domain 5, transcript variant X1
62. RPL13 ENSGALG00000006179 269.38 2168.23 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
63. ATP5G3 266.45 2144.64 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
64. RPL36 ENSGALG00000000474 265.47 2136.76 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
65. RPL23A ENSGALG00000003966 260.57 2097.32 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
66. MT-ND2 MT-ND2 258.61 2081.54
67. ATP6V0C ENSGALG00000009229 257.63 2073.65 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
68. ENSGALG00000018386 ENSGALG00000018386 252.73 2034.21
69. RPS14 ENSGALG00000004588 251.75 2026.32 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
70. RPS15 ENSGALG00000015195 251.75 2026.32 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
71. RPL29 ENSGALG00000026978 246.85 1986.88 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
72. RPS3A ENSGALG00000010077 246.85 1986.88 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
73. RPL38 ENSGALG00000001465 245.87 1979.00 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
74. RPS21 ENSGALG00000005338 245.87 1979.00 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
75. ENSGALG00000002696 ENSGALG00000002696 243.92 1963.30
76. RPL6 ENSGALG00000004818 241.96 1947.52 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
77. BTF3L4 ENSGALG00000010570 233.14 1876.53 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
78. RPL4 ENSGALG00000007711 229.22 1844.98 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
79. ERH ENSGALG00000017384 228.24 1837.09 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
80. LDHB ENSGALG00000035836 228.24 1837.09 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
81. MIF ENSGALG00000006326 227.26 1829.20 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
82. HSPE1 ENSGALG00000009070 226.28 1821.32 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
83. HNRNPA3 ENSGALG00000009250 224.32 1805.54 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
84. RPLP1 ENSGALG00000030878 223.34 1797.65 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
85. CRHOA CRHOA 221.38 1781.88
86. EIF4EBP1 ENSGALG00000003205 220.41 1774.07 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
87. NDUFB9 ENSGALG00000042242 219.43 1766.18 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
88. HNRNPDL ENSGALG00000023199 218.45 1758.29 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
89. TCEB3 ENSGALG00000034625 217.47 1750.41 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
90. HBE 213.55 1718.85 hemoglobin subunit epsilon
91. KRT19 ENSGALG00000019719 212.57 1710.97 keratin 19 [Source:NCBI gene;Acc:395861]
92. HBG1 HBG1 209.63 1687.30
93. PRDX1 ENSGALG00000010243 205.71 1655.75 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
94. CNN3 ENSGALG00000005597 198.85 1600.53 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
95. TPT1 ENSGALG00000028872 197.87 1592.65 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
96. RPL37A ENSGALG00000011472 190.04 1529.62 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
97. CDK1 ENSGALG00000003085 188.08 1513.85 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
98. RPL24 ENSGALG00000015339 188.08 1513.85 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
99. RPL12 ENSGALG00000008806 187.10 1505.96 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
100. HMGB1 ENSGALG00000042875 186.12 1498.07 high mobility group box 1 [Source:NCBI gene;Acc:395724]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA