Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s10.

Sample reads: 124,255. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 5874.82 47283.30
2. MT-CO3 MT-CO3 4642.56 37365.50
3. MT-ND5 MT-ND5 4570.83 36788.18
4. MT-ND4 MT-ND4 2902.49 23360.60
5. gga-mir-3527 gga-mir-3527 2827.44 22756.56
6. MT-CYB MT-CYB 2302.99 18535.54
7. MT-ND1 MT-ND1 2245.99 18076.78
8. MT-CO1 MT-CO1 2062.15 16597.15
9. EEF1A EEF1A 1777.12 14303.09
10. gga-mir-3533 ENSGALG00000027736 1458.85 11741.51 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. MT-ND3 MT-ND3 1365.74 10992.11
12. PPIA ENSGALG00000028600 990.46 7971.69 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
13. GAPDH ENSGALG00000014442 915.88 7371.43 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
14. NME2 ENSGALG00000002932 900.20 7245.23 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPL5 ENSGALG00000005922 701.63 5647.05 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. RPS3 ENSGALG00000017330 551.05 4435.11 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
17. RPL8 ENSGALG00000016232 481.69 3876.87 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
18. RPL7 ENSGALG00000035252 457.46 3681.85 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
19. RPL26 RPL26 455.56 3666.56
20. RPS7 ENSGALG00000016392 450.81 3628.33 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
21. RPL15 ENSGALG00000011290 435.61 3505.99 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
22. EIF4G2 ENSGALG00000005587 433.24 3486.92 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
23. CIRBP ENSGALG00000030918 431.34 3471.63 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
24. RPS23 ENSGALG00000015617 414.71 3337.78 ribosomal protein S23
25. RPL23 ENSGALG00000001634 400.93 3226.87 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
26. RAN ENSGALG00000002569 392.86 3161.92 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
27. ATP6V0C ENSGALG00000009229 388.58 3127.47 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
28. RPS10 ENSGALG00000002813 387.63 3119.83 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
29. RPL27A ENSGALG00000005948 379.08 3051.01 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
30. RPL7A ENSGALG00000003197 379.08 3051.01 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
31. RPS16 ENSGALG00000026490 376.23 3028.08 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
32. RPL18A 373.38 3005.14 ribosomal protein L18a
33. RPS27A ENSGALG00000036790 371.96 2993.71 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
34. ENO1 ENSGALG00000002377 360.56 2901.96 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
35. RPS11 ENSGALG00000017299 359.61 2894.31 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
36. MT-ND2 MT-ND2 357.70 2878.94
37. MDK ENSGALG00000008367 347.25 2794.83 midkine [Source:NCBI gene;Acc:423196]
38. RPS20 ENSGALG00000014432 337.75 2718.37 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
39. STMN1 ENSGALG00000001475 323.03 2599.90 stathmin 1 [Source:NCBI gene;Acc:396057]
40. RPL23A ENSGALG00000003966 315.43 2538.73 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
41. RPS29 ENSGALG00000012229 314.95 2534.86 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
42. SNRPG ENSGALG00000028409 306.88 2469.91 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
43. RPS4 RPS4 304.98 2454.62
44. RPL31 ENSGALG00000016775 301.18 2424.04 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
45. EEF1B2 ENSGALG00000008590 291.67 2347.50 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
46. LDHB ENSGALG00000035836 290.72 2339.85 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
47. RPL36 ENSGALG00000000474 290.25 2336.07 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
48. ENSGALG00000028992 ENSGALG00000028992 286.92 2309.27
49. H3-IX H3-IX 283.12 2278.68
50. RPL27 ENSGALG00000002837 281.70 2267.25 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
51. RPS24 ENSGALG00000004871 281.70 2267.25 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
52. RPL14 ENSGALG00000043379 275.05 2213.73 ribosomal protein L14
53. ATP5G3 274.10 2206.09 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
54. RPS12 ENSGALG00000013990 273.62 2202.22 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
55. RPS15A ENSGALG00000006771 273.15 2198.44 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
56. RPL38 ENSGALG00000001465 272.20 2190.79 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
57. RPSA 269.35 2167.85 ribosomal protein SA
58. RPS15 ENSGALG00000015195 266.50 2144.92 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
59. TMSB4X ENSGALG00000026383 258.42 2079.89 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
60. SLC25A6_1 ENSGALG00000016691 254.15 2045.52 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
61. EIF1 ENSGALG00000028517 250.35 2014.93 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
62. H2AFZ ENSGALG00000014023 243.70 1961.41 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
63. RPL35A ENSGALG00000007611, ENSGALG00000041230 237.99 1915.45 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
64. RPS14 ENSGALG00000004588 235.62 1896.38 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
65. RPL21 ENSGALG00000027035 231.34 1861.93 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
66. RPS6 ENSGALG00000015082 227.07 1827.57 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
67. RPL6 ENSGALG00000004818 223.27 1796.98 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
68. FKBP4 ENSGALG00000014331 222.79 1793.12 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
69. RPL13 ENSGALG00000006179 222.32 1789.34 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
70. RPS21 ENSGALG00000005338 222.32 1789.34 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
71. RPL32 ENSGALG00000027142 221.37 1781.69 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
72. RPL29 ENSGALG00000026978 219.94 1770.18 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
73. HMGN5 ENSGALG00000007131 219.47 1766.40 high mobility group nucleosome binding domain 5, transcript variant X1
74. KRT19 ENSGALG00000019719 218.99 1762.53 keratin 19 [Source:NCBI gene;Acc:395861]
75. CRHOA CRHOA 213.29 1716.66
76. HNRNPDL ENSGALG00000023199 211.39 1701.37 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
77. TPT1 ENSGALG00000028872 211.39 1701.37 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
78. RPS3A ENSGALG00000010077 203.79 1640.20 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
79. ERH ENSGALG00000017384 201.89 1624.91 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
80. TCEB3 ENSGALG00000034625 200.47 1613.48 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
81. RPL37A ENSGALG00000011472 198.57 1598.18 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
82. CNN3 ENSGALG00000005597 196.19 1579.03 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
83. SNRPE ENSGALG00000000137 196.19 1579.03 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
84. RPL37 ENSGALG00000014833 193.34 1556.09 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
85. RPL4 ENSGALG00000007711 192.87 1552.31 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
86. RPL10A ENSGALG00000002644 191.44 1540.80 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
87. EIF4EBP1 ENSGALG00000003205 187.17 1506.43 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
88. RPL24 ENSGALG00000015339 185.74 1494.92 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
89. RPLP1 ENSGALG00000030878 183.84 1479.63 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
90. BTF3L4 ENSGALG00000010570 183.37 1475.85 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
91. HMGB2 ENSGALG00000010745 181.94 1464.34 high mobility group box 2 [Source:NCBI gene;Acc:396482]
92. RPL12 ENSGALG00000008806 180.99 1456.69 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
93. CDK1 ENSGALG00000003085 177.19 1426.11 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
94. RPL36AL ENSGALG00000004952 175.76 1414.60 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
95. HSPE1 ENSGALG00000009070 174.81 1406.95 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
96. MIF ENSGALG00000006326 174.81 1406.95 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
97. EIF3F ENSGALG00000005326 171.49 1380.23 eukaryotic translation initiation factor 3 subunit F
98. HNRNPA3 ENSGALG00000009250 171.01 1376.37 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
99. KPNA2 ENSGALG00000003584 168.64 1357.29 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
100. SEC61G ENSGALG00000037863 168.16 1353.43 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA