Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s59.

Sample reads: 124,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 6262.49 50409.26
2. MT-CO3 MT-CO3 4078.23 32827.28
3. MT-ND5 MT-ND5 3863.45 31098.43
4. MT-CYB MT-CYB 2500.57 20128.08
5. MT-ND4 MT-ND4 2375.61 19122.22
6. MT-ND1 MT-ND1 2013.73 16209.31
7. EEF1A EEF1A 1994.21 16052.18
8. gga-mir-3527 gga-mir-3527 1487.85 11976.29
9. PPIA ENSGALG00000028600 1374.60 11064.70 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
10. GAPDH ENSGALG00000014442 1230.11 9901.64 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. MT-ND3 MT-ND3 1219.69 9817.77
12. gga-mir-3533 ENSGALG00000027736 982.78 7910.78 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
13. NME2 ENSGALG00000002932 836.99 6737.26 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. MT-CO1 MT-CO1 826.58 6653.47
15. RPS23 ENSGALG00000015617 817.47 6580.14 ribosomal protein S23
16. MDK ENSGALG00000008367 620.91 4997.95 midkine [Source:NCBI gene;Acc:423196]
17. RPS7 ENSGALG00000016392 570.15 4589.36 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
18. CRABP-I ENSGALG00000003193 501.16 4034.03 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
19. RPS6 ENSGALG00000015082 489.44 3939.70 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
20. RPL8 ENSGALG00000016232 475.12 3824.43 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
21. RPL5 ENSGALG00000005922 469.91 3782.49 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
22. RPL26 RPL26 462.10 3719.63
23. RPS27A ENSGALG00000036790 436.07 3510.10 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
24. RPL23 ENSGALG00000001634 429.56 3457.70 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
25. RPL7 ENSGALG00000035252 429.56 3457.70 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
26. EIF4G2 ENSGALG00000005587 425.66 3426.31 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
27. ENO1 ENSGALG00000002377 411.34 3311.04 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
28. RPL37 ENSGALG00000014833 408.73 3290.03 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
29. RPL7A ENSGALG00000003197 394.42 3174.84 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
30. RPL18A 391.81 3153.83 ribosomal protein L18a
31. ATP6V0C ENSGALG00000009229 389.21 3132.91 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
32. RPL31 ENSGALG00000016775 385.30 3101.43 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
33. RPS16 ENSGALG00000026490 381.40 3070.04 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
34. RPS4 RPS4 364.48 2933.84
35. LDHB ENSGALG00000035836 359.27 2891.91 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
36. FKBP4 ENSGALG00000014331 355.36 2860.43 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
37. STMN1 ENSGALG00000001475 347.55 2797.57 stathmin 1 [Source:NCBI gene;Acc:396057]
38. RPS29 ENSGALG00000012229 342.35 2755.71 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
39. EEF1B2 ENSGALG00000008590 341.05 2745.25 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
40. RPL15 ENSGALG00000011290 341.05 2745.25 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
41. RPL27A ENSGALG00000005948 339.74 2734.70 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
42. RPL36 ENSGALG00000000474 337.14 2713.77 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
43. RPS10 ENSGALG00000002813 337.14 2713.77 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
44. LUM ENSGALG00000011271 329.33 2650.91 lumican [Source:NCBI gene;Acc:417891]
45. RPL14 ENSGALG00000043379 329.33 2650.91 ribosomal protein L14
46. ENSGALG00000002696 ENSGALG00000002696 322.82 2598.51
47. TXN ENSGALG00000015704 312.41 2514.71 thioredoxin [Source:NCBI gene;Acc:396437]
48. CIRBP ENSGALG00000030918 308.50 2483.24 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
49. RPL27 ENSGALG00000002837 300.69 2420.37 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
50. RPS3 ENSGALG00000017330 294.18 2367.97 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
51. RPS24 ENSGALG00000004871 291.58 2347.04 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
52. SNRPG ENSGALG00000028409 288.98 2326.11 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
53. MT-ND2 MT-ND2 287.68 2315.65
54. RAN ENSGALG00000002569 287.68 2315.65 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
55. KPNA2 ENSGALG00000003584 275.96 2221.31 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
56. RPS8 ENSGALG00000010124 274.66 2210.85 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
57. RPS11 ENSGALG00000017299 269.45 2168.91 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
58. RPS14 ENSGALG00000004588 268.15 2158.45 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
59. EIF1 ENSGALG00000028517 266.85 2147.98 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
60. RPL38 ENSGALG00000001465 266.85 2147.98 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
61. RPLP1 ENSGALG00000030878 261.64 2106.04 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
62. ENSGALG00000028992 ENSGALG00000028992 255.13 2053.64
63. H3-IX H3-IX 252.53 2032.71
64. SLC25A6_1 ENSGALG00000016691 247.32 1990.78 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
65. HNRNPDL ENSGALG00000023199 243.42 1959.38 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
66. TMSB4X ENSGALG00000026383 243.42 1959.38 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
67. RPL23A ENSGALG00000003966 239.51 1927.91 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
68. RPSA 239.51 1927.91 ribosomal protein SA
69. ATP5G3 230.40 1854.58 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
70. SNRPE ENSGALG00000000137 226.50 1823.19 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
71. RPL29 ENSGALG00000026978 219.99 1770.79 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
72. RPS12 ENSGALG00000013990 217.38 1749.78 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
73. BTF3L4 ENSGALG00000010570 216.08 1739.31 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
74. TPT1 ENSGALG00000028872 213.48 1718.38 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
75. YWHAZ ENSGALG00000031387 208.27 1676.45 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
76. CRHOA CRHOA 201.76 1624.05
77. H2AFZ ENSGALG00000014023 197.86 1592.65 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
78. HMGN5 ENSGALG00000007131 197.86 1592.65 high mobility group nucleosome binding domain 5, transcript variant X1
79. RPS15A ENSGALG00000006771 196.56 1582.19 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
80. RPL32 ENSGALG00000027142 195.26 1571.72 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
81. RPS20 ENSGALG00000014432 195.26 1571.72 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
82. CNN3 ENSGALG00000005597 193.95 1561.18 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
83. RPS21 ENSGALG00000005338 193.95 1561.18 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
84. HSPE1 ENSGALG00000009070 190.05 1529.79 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
85. RPS15 ENSGALG00000015195 190.05 1529.79 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
86. RPL4 ENSGALG00000007711 188.75 1519.32 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
87. TCF12 ENSGALG00000004304 188.75 1519.32 transcription factor 12 [Source:NCBI gene;Acc:396334]
88. HNRNPA3 ENSGALG00000009250 187.45 1508.86 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
89. RPL12 ENSGALG00000008806 186.14 1498.31 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
90. KRT19 ENSGALG00000019719 179.63 1445.91 keratin 19 [Source:NCBI gene;Acc:395861]
91. RPL35A ENSGALG00000007611, ENSGALG00000041230 179.63 1445.91 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
92. RPL21 ENSGALG00000027035 178.33 1435.45 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
93. ANP32B ENSGALG00000037483 177.03 1424.98 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
94. RPL13 ENSGALG00000006179 177.03 1424.98 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
95. PRDX1 ENSGALG00000010243 175.73 1414.52 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
96. SEC61G ENSGALG00000037863 175.73 1414.52 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
97. EEF1D 174.43 1404.06 eukaryotic translation elongation factor 1 delta, transcript variant X13
98. ATP6V1G1 ENSGALG00000007190 171.82 1383.05 ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
99. C5ORF13 C5ORF13 170.52 1372.58
100. RPL6 ENSGALG00000004818 166.62 1341.19 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA