Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s58.

Sample reads: 124,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ND5 MT-ND5 3839.94 30911.20
2. MT-ATP6 MT-ATP6 3683.24 29649.78
3. MT-CO3 MT-CO3 3577.19 28796.09
4. EEF1A EEF1A 1934.22 15570.31
5. MT-CYB MT-CYB 1934.22 15570.31
6. MT-ND4 MT-ND4 1600.24 12881.80
7. gga-mir-3533 ENSGALG00000027736 1533.76 12346.64 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. GAPDH ENSGALG00000014442 1339.07 10779.40 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
9. MT-ND1 MT-ND1 1183.96 9530.78
10. PPIA ENSGALG00000028600 1169.71 9416.07 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
11. gga-mir-3527 gga-mir-3527 1090.57 8779.00
12. NME2 ENSGALG00000002932 1077.91 8677.09 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
13. MT-ND3 MT-ND3 1041.50 8383.99
14. RPS23 ENSGALG00000015617 840.48 6765.79 ribosomal protein S23
15. RPL5 ENSGALG00000005922 734.43 5912.10 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. MDK ENSGALG00000008367 717.02 5771.95 midkine [Source:NCBI gene;Acc:423196]
17. MT-CO1 MT-CO1 669.54 5389.74
18. RPS6 ENSGALG00000015082 631.55 5083.93 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
19. RPL8 ENSGALG00000016232 579.32 4663.48 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
20. EIF4G2 ENSGALG00000005587 536.58 4319.42 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
21. CRABP-I ENSGALG00000003193 527.08 4242.95 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
22. RPL26 RPL26 522.33 4204.71
23. RPL23 ENSGALG00000001634 503.34 4051.85 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
24. RPS7 ENSGALG00000016392 478.01 3847.94 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
25. RPL7A ENSGALG00000003197 476.43 3835.22 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
26. RPL27A ENSGALG00000005948 459.02 3695.07 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
27. CIRBP ENSGALG00000030918 452.69 3644.12 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
28. RPL15 ENSGALG00000011290 444.77 3580.36 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
29. RPS27A ENSGALG00000036790 438.44 3529.41 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
30. STMN1 ENSGALG00000001475 422.62 3402.06 stathmin 1 [Source:NCBI gene;Acc:396057]
31. ENSGALG00000002696 ENSGALG00000002696 411.54 3312.86
32. ATP6V0C ENSGALG00000009229 402.04 3236.39 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
33. RPL18A 378.30 3045.28 ribosomal protein L18a
34. RPL31 ENSGALG00000016775 373.55 3007.05 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
35. TMSB4X ENSGALG00000026383 371.96 2994.25 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
36. RAN ENSGALG00000002569 368.80 2968.81 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
37. RPL7 ENSGALG00000035252 367.22 2956.09 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
38. RPS20 ENSGALG00000014432 362.47 2917.85 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
39. RPS4 RPS4 357.72 2879.62
40. ENO1 ENSGALG00000002377 356.14 2866.90 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
41. FKBP4 ENSGALG00000014331 335.56 2701.23 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
42. LDHB ENSGALG00000035836 332.39 2675.71 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
43. EEF1B2 ENSGALG00000008590 329.23 2650.27 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
44. RPS29 ENSGALG00000012229 318.15 2561.08 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
45. RPL36 ENSGALG00000000474 311.82 2510.13 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
46. RPS16 ENSGALG00000026490 307.07 2471.89 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
47. RPS8 ENSGALG00000010124 307.07 2471.89 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
48. SNRPG ENSGALG00000028409 303.90 2446.37 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
49. H2AFZ ENSGALG00000014023 291.24 2344.46 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
50. RPS12 ENSGALG00000013990 291.24 2344.46 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
51. ATP5G3 283.33 2280.78 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
52. RPLP1 ENSGALG00000030878 283.33 2280.78 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
53. H3-IX H3-IX 278.58 2242.55
54. RPL14 ENSGALG00000043379 278.58 2242.55 ribosomal protein L14
55. SLC25A6_1 ENSGALG00000016691 278.58 2242.55 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
56. ENSGALG00000028992 ENSGALG00000028992 275.41 2217.03
57. RPS10 ENSGALG00000002813 273.83 2204.31 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
58. SNRPE ENSGALG00000000137 272.25 2191.59 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
59. EIF1 ENSGALG00000028517 269.08 2166.07 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
60. TXN ENSGALG00000015704 267.50 2153.35 thioredoxin [Source:NCBI gene;Acc:396437]
61. RPL21 ENSGALG00000027035 264.33 2127.83 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
62. RPL37 ENSGALG00000014833 264.33 2127.83 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
63. RPS14 ENSGALG00000004588 262.75 2115.12 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
64. RPS3 ENSGALG00000017330 262.75 2115.12 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
65. RPL38 ENSGALG00000001465 261.17 2102.40 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
66. HMGN5 ENSGALG00000007131 256.42 2064.16 high mobility group nucleosome binding domain 5, transcript variant X1
67. KPNA2 ENSGALG00000003584 253.25 2038.64 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
68. LUM ENSGALG00000011271 253.25 2038.64 lumican [Source:NCBI gene;Acc:417891]
69. RPL27 ENSGALG00000002837 253.25 2038.64 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
70. CRHOA CRHOA 250.09 2013.20
71. TCF12 ENSGALG00000004304 246.92 1987.69 transcription factor 12 [Source:NCBI gene;Acc:396334]
72. RPL35A ENSGALG00000007611, ENSGALG00000041230 243.76 1962.25 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
73. HMGN2 HMGN2 242.17 1949.45
74. RPS11 ENSGALG00000017299 239.01 1924.01 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
75. RPLP2 ENSGALG00000034811 232.68 1873.05 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
76. RPSA 224.76 1809.30 ribosomal protein SA
77. RPL23A ENSGALG00000003966 212.10 1707.39 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
78. HSPE1 ENSGALG00000009070 210.52 1694.67 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
79. ANP32B ENSGALG00000037483 208.93 1681.87 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
80. RPS21 ENSGALG00000005338 208.93 1681.87 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
81. RPL10A ENSGALG00000002644 207.35 1669.15 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
82. NONO ENSGALG00000005507 205.77 1656.43 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
83. RPL32 ENSGALG00000027142 205.77 1656.43 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
84. RPS15A ENSGALG00000006771 205.77 1656.43 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
85. MT-ND2 MT-ND2 204.18 1643.63
86. EIF5A2 ENSGALG00000009309 202.60 1630.91 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
87. RPL4 ENSGALG00000007711 201.02 1618.19 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
88. HMGB1 ENSGALG00000042875 193.11 1554.52 high mobility group box 1 [Source:NCBI gene;Acc:395724]
89. RPL12 ENSGALG00000008806 193.11 1554.52 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
90. RPS24 ENSGALG00000004871 193.11 1554.52 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
91. ENSGALG00000018384 ENSGALG00000018384 189.94 1529.00
92. ERH ENSGALG00000017384 185.19 1490.76 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
93. HMGB2 ENSGALG00000010745 183.61 1478.05 high mobility group box 2 [Source:NCBI gene;Acc:396482]
94. PDIA6 ENSGALG00000016447 180.44 1452.53 protein disulfide isomerase family A member 6 [Source:HGNC Symbol;Acc:HGNC:30168]
95. EIF4EBP1 ENSGALG00000003205 178.86 1439.81 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
96. IGF2BP3 ENSGALG00000010961 178.86 1439.81 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
97. RPL6 ENSGALG00000004818 177.28 1427.09 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
98. RPS15 ENSGALG00000015195 177.28 1427.09 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
99. RPL13 ENSGALG00000006179 175.69 1414.29 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
100. BTF3L4 ENSGALG00000010570 174.11 1401.57 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA