Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s52.

Sample reads: 124,245. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3655.65 29426.58
2. MT-ATP6 MT-ATP6 3570.45 28740.75
3. MT-ND5 MT-ND5 2462.77 19824.35
4. MT-CYB MT-CYB 1884.80 15171.92
5. EEF1A EEF1A 1879.67 15130.62
6. GAPDH ENSGALG00000014442 1598.39 12866.43 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
7. gga-mir-3533 ENSGALG00000027736 1377.67 11089.71 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. PPIA ENSGALG00000028600 1321.21 10635.23 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
9. MT-ND4 MT-ND4 1175.44 9461.84
10. gga-mir-3527 gga-mir-3527 1061.48 8544.51
11. NME2 ENSGALG00000002932 895.18 7205.86 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
12. RPS23 ENSGALG00000015617 785.33 6321.60 ribosomal protein S23
13. MT-ND1 MT-ND1 767.88 6181.14
14. MT-CO1 MT-CO1 764.80 6156.35
15. RPS6 ENSGALG00000015082 661.12 5321.76 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
16. MT-ND3 MT-ND3 640.59 5156.50
17. EIF4G2 ENSGALG00000005587 546.14 4396.22 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
18. RPL8 ENSGALG00000016232 541.01 4354.92 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
19. MDK ENSGALG00000008367 533.82 4297.05 midkine [Source:NCBI gene;Acc:423196]
20. RPS7 ENSGALG00000016392 512.26 4123.50 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
21. RPL15 ENSGALG00000011290 500.97 4032.62 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
22. RPL26 RPL26 485.57 3908.65
23. RPL5 ENSGALG00000005922 479.41 3859.07 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
24. RPS27A ENSGALG00000036790 459.91 3702.10 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
25. STMN1 ENSGALG00000001475 444.51 3578.13 stathmin 1 [Source:NCBI gene;Acc:396057]
26. ENSGALG00000018384 ENSGALG00000018384 431.16 3470.67
27. RPL27A ENSGALG00000005948 417.82 3363.29 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
28. RPL23 ENSGALG00000001634 416.79 3355.00 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
29. ATP6V0C ENSGALG00000009229 415.77 3346.79 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
30. ENO1 ENSGALG00000002377 409.61 3297.20 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
31. TMSB4X ENSGALG00000026383 385.99 3107.07 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
32. RPL18A 378.81 3049.27 ribosomal protein L18a
33. ENSGALG00000002696 ENSGALG00000002696 369.57 2974.90
34. RAN ENSGALG00000002569 354.17 2850.93 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
35. LDHB ENSGALG00000035836 345.96 2784.85 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
36. EIF1 ENSGALG00000028517 341.85 2751.76 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
37. RPS4 RPS4 339.80 2735.26
38. RPL7A ENSGALG00000003197 337.75 2718.76 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
39. CIRBP ENSGALG00000030918 334.67 2693.96 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
40. ATP5G3 324.40 2611.30 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
41. RPS12 ENSGALG00000013990 323.37 2603.00 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
42. RPS16 ENSGALG00000026490 322.35 2594.79 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
43. RPL7 ENSGALG00000035252 314.13 2528.63 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
44. H3-IX H3-IX 298.74 2404.74
45. MT-ND2 MT-ND2 294.63 2371.66
46. RPS20 ENSGALG00000014432 291.55 2346.87 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
47. SNRPG ENSGALG00000028409 290.52 2338.57 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
48. CRABP-I ENSGALG00000003193 287.44 2313.78 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
49. RPL31 ENSGALG00000016775 282.31 2272.49 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
50. H2AFZ ENSGALG00000014023 279.23 2247.69 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
51. SLC25A6_1 ENSGALG00000016691 278.20 2239.40 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
52. RPS3 ENSGALG00000017330 274.10 2206.40 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
53. CRHOA CRHOA 272.04 2189.82
54. EEF1B2 ENSGALG00000008590 271.02 2181.61 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
55. RPL14 ENSGALG00000043379 268.96 2165.02 ribosomal protein L14
56. RPL35A ENSGALG00000007611, ENSGALG00000041230 268.96 2165.02 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
57. RPS10 ENSGALG00000002813 268.96 2165.02 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
58. RPLP1 ENSGALG00000030878 263.83 2123.73 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
59. MEIS2 ENSGALG00000039118 260.75 2098.94 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
60. RPL36 ENSGALG00000000474 258.70 2082.44 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
61. RPL37 ENSGALG00000014833 256.65 2065.93 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
62. HMGN5 ENSGALG00000007131 254.59 2049.35 high mobility group nucleosome binding domain 5, transcript variant X1
63. TCF12 ENSGALG00000004304 254.59 2049.35 transcription factor 12 [Source:NCBI gene;Acc:396334]
64. HNRNPDL ENSGALG00000023199 249.46 2008.06 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
65. RPS8 ENSGALG00000010124 248.43 1999.77 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
66. TXN ENSGALG00000015704 248.43 1999.77 thioredoxin [Source:NCBI gene;Acc:396437]
67. ENSGALG00000028992 ENSGALG00000028992 247.41 1991.56
68. RPL27 ENSGALG00000002837 241.25 1941.97 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
69. RPL21 ENSGALG00000027035 240.22 1933.68 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
70. FKBP4 ENSGALG00000014331 233.03 1875.80 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
71. KPNA2 ENSGALG00000003584 233.03 1875.80 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
72. RPS29 ENSGALG00000012229 230.98 1859.30 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
73. HMGN2 HMGN2 224.82 1809.71
74. RPL3 ENSGALG00000012172 224.82 1809.71 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
75. RPL38 ENSGALG00000001465 223.79 1801.42 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
76. RPL6 ENSGALG00000004818 223.79 1801.42 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
77. RPL32 ENSGALG00000027142 219.69 1768.42 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
78. RPS14 ENSGALG00000004588 219.69 1768.42 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
79. EIF5A2 ENSGALG00000009309 218.66 1760.13 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
80. RPS24 ENSGALG00000004871 218.66 1760.13 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
81. RPS15A ENSGALG00000006771 214.56 1727.13 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
82. ALDH1A2 ENSGALG00000004270 213.53 1718.83 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
83. HMGB1 ENSGALG00000042875 213.53 1718.83 high mobility group box 1 [Source:NCBI gene;Acc:395724]
84. ANP32B ENSGALG00000037483 211.48 1702.33 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
85. NONO ENSGALG00000005507 211.48 1702.33 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
86. RPSA 210.45 1694.04 ribosomal protein SA
87. HSPE1 ENSGALG00000009070 209.42 1685.75 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
88. RPL10A ENSGALG00000002644 208.40 1677.54 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
89. RPS15 ENSGALG00000015195 206.34 1660.96 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
90. HNRNPA3 ENSGALG00000009250 203.26 1636.16 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
91. SNRPE ENSGALG00000000137 203.26 1636.16 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
92. RPLP0 ENSGALG00000023294 201.21 1619.66 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
93. RPS11 ENSGALG00000017299 201.21 1619.66 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
94. HMGB2 ENSGALG00000010745 198.13 1594.87 high mobility group box 2 [Source:NCBI gene;Acc:396482]
95. RPL12 ENSGALG00000008806 193.00 1553.58 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
96. MIF ENSGALG00000006326 189.92 1528.78 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
97. EIF3F ENSGALG00000005326 185.81 1495.70 eukaryotic translation initiation factor 3 subunit F
98. RPS21 ENSGALG00000005338 183.76 1479.20 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
99. BTF3L4 ENSGALG00000010570 181.70 1462.62 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
100. RPL13 ENSGALG00000006179 181.70 1462.62 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA