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Experiment Chicken_E3_posterior_slice_2, section s50.

Sample reads: 124,245. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4031.73 32452.07
2. MT-ATP6 MT-ATP6 3861.76 31083.95
3. MT-ND5 MT-ND5 3693.58 29730.24
4. MT-CYB MT-CYB 2233.96 17981.52
5. EEF1A EEF1A 2065.78 16627.81
6. gga-mir-3533 ENSGALG00000027736 1692.56 13623.70 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. MT-ND4 MT-ND4 1686.26 13572.99
8. GAPDH ENSGALG00000014442 1492.90 12016.60 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
9. PPIA ENSGALG00000028600 1211.41 9750.84 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
10. gga-mir-3527 gga-mir-3527 1098.99 8845.95
11. NME2 ENSGALG00000002932 1064.82 8570.91 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
12. MT-ND1 MT-ND1 921.82 7419.88
13. RPS23 ENSGALG00000015617 819.30 6594.68 ribosomal protein S23
14. MT-CO1 MT-CO1 766.24 6167.59
15. MT-ND3 MT-ND3 737.46 5935.94
16. MDK ENSGALG00000008367 646.62 5204.75 midkine [Source:NCBI gene;Acc:423196]
17. EIF4G2 ENSGALG00000005587 597.16 4806.64 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
18. RPS6 ENSGALG00000015082 572.88 4611.21 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
19. RPL5 ENSGALG00000005922 538.70 4336.09 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
20. RPS7 ENSGALG00000016392 509.92 4104.43 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
21. RPL15 ENSGALG00000011290 485.64 3909.00 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
22. RPL26 RPL26 475.75 3829.39
23. RPL8 ENSGALG00000016232 468.56 3771.52 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
24. ATP6V0C ENSGALG00000009229 426.29 3431.28 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
25. RPL23 ENSGALG00000001634 423.59 3409.55 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
26. RPS27A ENSGALG00000036790 407.40 3279.23 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
27. CIRBP ENSGALG00000030918 393.01 3163.40 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
28. ENO1 ENSGALG00000002377 390.31 3141.67 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
29. TMSB4X ENSGALG00000026383 387.61 3119.94 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
30. ENSGALG00000002696 ENSGALG00000002696 384.92 3098.29
31. STMN1 ENSGALG00000001475 368.73 2967.97 stathmin 1 [Source:NCBI gene;Acc:396057]
32. RPL27A ENSGALG00000005948 366.03 2946.24 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
33. RPL31 ENSGALG00000016775 353.44 2844.90 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
34. RPL7A ENSGALG00000003197 349.84 2815.92 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
35. FKBP4 ENSGALG00000014331 339.05 2729.07 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
36. EIF1 ENSGALG00000028517 332.76 2678.44 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
37. RAN ENSGALG00000002569 317.47 2555.37 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
38. RPS16 ENSGALG00000026490 317.47 2555.37 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
39. MEIS2 ENSGALG00000039118 314.77 2533.64 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
40. H2AFZ ENSGALG00000014023 310.27 2497.41 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
41. ENSGALG00000018384 ENSGALG00000018384 302.18 2432.30
42. RPL18A 286.89 2309.23 ribosomal protein L18a
43. RPS3 ENSGALG00000017330 286.89 2309.23 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
44. RPS20 ENSGALG00000014432 284.19 2287.49 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
45. HMGN5 ENSGALG00000007131 278.79 2244.03 high mobility group nucleosome binding domain 5, transcript variant X1
46. ALDH1A2 ENSGALG00000004270 276.10 2222.37 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
47. H3-IX H3-IX 274.30 2207.89
48. MT-ND2 MT-ND2 269.80 2171.67
49. ATP5G3 268.90 2164.42 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
50. LDHB ENSGALG00000035836 268.90 2164.42 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
51. RPS4 RPS4 268.00 2157.18
52. SLC25A6_1 ENSGALG00000016691 266.20 2142.69 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
53. RPL7 ENSGALG00000035252 265.30 2135.44 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
54. TCF12 ENSGALG00000004304 254.51 2048.59 transcription factor 12 [Source:NCBI gene;Acc:396334]
55. RPS12 ENSGALG00000013990 250.92 2019.70 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
56. EEF1B2 ENSGALG00000008590 248.22 1997.96 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
57. RPLP1 ENSGALG00000030878 248.22 1997.96 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
58. RPL32 ENSGALG00000027142 247.32 1990.72 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
59. RPL37 ENSGALG00000014833 243.72 1961.74 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
60. RPS14 ENSGALG00000004588 241.92 1947.25 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
61. CRHOA CRHOA 241.02 1940.01
62. RPS8 ENSGALG00000010124 241.02 1940.01 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
63. SNRPE ENSGALG00000000137 241.02 1940.01 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
64. RPS10 ENSGALG00000002813 239.22 1925.52 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
65. ENSGALG00000028992 ENSGALG00000028992 236.53 1903.87
66. RPL35A ENSGALG00000007611, ENSGALG00000041230 232.93 1874.89 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
67. RPL21 ENSGALG00000027035 226.63 1824.18 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
68. HNRNPDL ENSGALG00000023199 220.34 1773.55 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
69. KPNA2 ENSGALG00000003584 218.54 1759.06 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
70. RPL38 ENSGALG00000001465 217.64 1751.82 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
71. NDUFB9 ENSGALG00000042242 214.94 1730.09 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
72. EIF5A2 ENSGALG00000009309 214.04 1722.84 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
73. SNRPG ENSGALG00000028409 214.04 1722.84 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
74. RPL36 ENSGALG00000000474 212.24 1708.36 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
75. CRABP-I ENSGALG00000003193 210.45 1693.95 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
76. ANP32B ENSGALG00000037483 207.75 1672.21 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
77. RPS29 ENSGALG00000012229 204.15 1643.24 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
78. RPL13 ENSGALG00000006179 198.75 1599.77 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
79. RPL3 ENSGALG00000012172 198.75 1599.77 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
80. HMGN2 HMGN2 196.06 1578.12
81. HSPE1 ENSGALG00000009070 194.26 1563.63 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
82. RPL6 ENSGALG00000004818 192.46 1549.14 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
83. RPL27 ENSGALG00000002837 191.56 1541.90 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
84. RPLP2 ENSGALG00000034811 190.66 1534.65 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
85. RPS24 ENSGALG00000004871 190.66 1534.65 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
86. RPL14 ENSGALG00000043379 189.76 1527.41 ribosomal protein L14
87. BTF3L4 ENSGALG00000010570 187.96 1512.92 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
88. YWHAZ ENSGALG00000031387 187.06 1505.68 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
89. NONO ENSGALG00000005507 185.26 1491.19 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
90. TXN ENSGALG00000015704 184.36 1483.94 thioredoxin [Source:NCBI gene;Acc:396437]
91. CALM CALM 182.57 1469.54
92. IGF2BP3 ENSGALG00000010961 180.77 1455.05 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
93. RPSA 180.77 1455.05 ribosomal protein SA
94. ANXA1 ENSGALG00000015148 178.97 1440.56 annexin A1 [Source:NCBI gene;Acc:404271]
95. HMGB1 ENSGALG00000042875 178.07 1433.32 high mobility group box 1 [Source:NCBI gene;Acc:395724]
96. HMGB2 ENSGALG00000010745 177.17 1426.07 high mobility group box 2 [Source:NCBI gene;Acc:396482]
97. MIF ENSGALG00000006326 177.17 1426.07 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
98. PGK1 ENSGALG00000007936 177.17 1426.07 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
99. TPT1 ENSGALG00000028872 177.17 1426.07 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
100. CCT6 CCT6 174.47 1404.34
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA