Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s48.

Sample reads: 124,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5089.91 40969.30
2. MT-ATP6 MT-ATP6 4955.14 39884.52
3. MT-ND5 MT-ND5 3466.63 27903.32
4. MT-CYB MT-CYB 2750.10 22135.89
5. MT-ND4 MT-ND4 2528.32 20350.75
6. gga-mir-3527 gga-mir-3527 2355.16 18956.97
7. EEF1A EEF1A 2097.55 16883.43
8. GAPDH ENSGALG00000014442 1540.54 12399.99 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
9. MT-ND1 MT-ND1 1469.74 11830.11
10. MT-ND3 MT-ND3 1426.23 11479.90
11. PPIA ENSGALG00000028600 1290.60 10388.19 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
12. MT-CO1 MT-CO1 1039.82 8369.64
13. gga-mir-3533 ENSGALG00000027736 1012.52 8149.90 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
14. RPS23 ENSGALG00000015617 882.01 7099.40 ribosomal protein S23
15. NME2 ENSGALG00000002932 829.98 6680.61 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
16. RPL23 ENSGALG00000001634 568.10 4572.71 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
17. RPS7 ENSGALG00000016392 522.04 4201.96 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
18. RPL5 ENSGALG00000005922 517.78 4167.67 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
19. EIF4G2 ENSGALG00000005587 493.04 3968.54 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
20. RPL26 RPL26 489.63 3941.09
21. ENO1 ENSGALG00000002377 485.36 3906.72 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
22. RPL8 ENSGALG00000016232 473.42 3810.61 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
23. RPS6 ENSGALG00000015082 448.68 3611.48 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
24. RPL18A 432.48 3481.08 ribosomal protein L18a
25. RPS10 ENSGALG00000002813 418.83 3371.21 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
26. RPS4 RPS4 409.44 3295.63
27. RPS27A ENSGALG00000036790 405.18 3261.34 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
28. RPL36 ENSGALG00000000474 404.33 3254.50 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
29. RPL7 ENSGALG00000035252 403.47 3247.58 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
30. RPS29 ENSGALG00000012229 388.12 3124.02 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
31. RPS16 ENSGALG00000026490 386.41 3110.26 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
32. RPL27A ENSGALG00000005948 383.00 3082.81 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
33. RPL15 ENSGALG00000011290 381.30 3069.13 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
34. RPL7A ENSGALG00000003197 378.74 3048.52 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
35. RPL37 ENSGALG00000014833 373.62 3007.31 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
36. RPL31 ENSGALG00000016775 363.38 2924.89 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
37. ATP6V0C ENSGALG00000009229 357.41 2876.84 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
38. TMSB4X ENSGALG00000026383 344.62 2773.89 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
39. RAN ENSGALG00000002569 341.20 2746.36 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
40. RPL38 ENSGALG00000001465 337.79 2718.91 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
41. LDHB ENSGALG00000035836 335.23 2698.31 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
42. RPL14 ENSGALG00000043379 331.82 2670.86 ribosomal protein L14
43. RPS3 ENSGALG00000017330 329.26 2650.25 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
44. SLC25A6_1 ENSGALG00000016691 327.56 2636.57 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
45. ATP5G3 325.00 2615.96 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
46. MDK ENSGALG00000008367 324.14 2609.04 midkine [Source:NCBI gene;Acc:423196]
47. STMN1 ENSGALG00000001475 324.14 2609.04 stathmin 1 [Source:NCBI gene;Acc:396057]
48. RPL27 ENSGALG00000002837 316.47 2547.31 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
49. MT-ND2 MT-ND2 312.20 2512.94
50. ENSGALG00000002696 ENSGALG00000002696 302.82 2437.43
51. SNRPG ENSGALG00000028409 302.82 2437.43 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
52. RPS11 ENSGALG00000017299 297.70 2396.22 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
53. RPS24 ENSGALG00000004871 296.85 2389.38 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
54. EEF1B2 ENSGALG00000008590 295.14 2375.62 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
55. TXN ENSGALG00000015704 289.17 2327.56 thioredoxin [Source:NCBI gene;Acc:396437]
56. FKBP4 ENSGALG00000014331 288.32 2320.72 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
57. H3-IX H3-IX 288.32 2320.72
58. RPL23A ENSGALG00000003966 288.32 2320.72 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
59. KPNA2 ENSGALG00000003584 284.91 2293.27 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
60. RPL35A ENSGALG00000007611, ENSGALG00000041230 281.49 2265.75 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
61. RPS14 ENSGALG00000004588 279.79 2252.06 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
62. RPS15 ENSGALG00000015195 279.79 2252.06 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
63. RPS20 ENSGALG00000014432 277.23 2231.46 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
64. RPS21 ENSGALG00000005338 273.82 2204.01 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
65. RPLP1 ENSGALG00000030878 271.26 2183.40 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
66. CIRBP ENSGALG00000030918 267.85 2155.96 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
67. RPS8 ENSGALG00000010124 254.20 2046.09 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
68. CRHOA CRHOA 249.08 2004.87
69. H2AFZ ENSGALG00000014023 243.11 1956.82 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
70. HNRNPDL ENSGALG00000023199 237.14 1908.77 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
71. RPS12 ENSGALG00000013990 237.14 1908.77 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
72. RPL29 ENSGALG00000026978 236.28 1901.85 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
73. ENSGALG00000028992 ENSGALG00000028992 234.58 1888.16
74. CRABP-I ENSGALG00000003193 232.02 1867.56 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
75. EIF1 ENSGALG00000028517 228.61 1840.11 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
76. RPSA 228.61 1840.11 ribosomal protein SA
77. RPL13 ENSGALG00000006179 221.78 1785.13 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
78. ALDH1A2 ENSGALG00000004270 220.93 1778.29 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
79. RPS15A ENSGALG00000006771 216.66 1743.92 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
80. HSPE1 ENSGALG00000009070 213.25 1716.47 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
81. NDUFB9 ENSGALG00000042242 213.25 1716.47 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
82. HSPA8 ENSGALG00000006512 205.58 1654.74 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
83. YWHAZ ENSGALG00000031387 197.05 1586.08 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
84. RPL21 ENSGALG00000027035 196.19 1579.16 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
85. HMGN5 ENSGALG00000007131 195.34 1572.32 high mobility group nucleosome binding domain 5, transcript variant X1
86. PRDX1 ENSGALG00000010243 192.78 1551.71 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
87. BTF3L4 ENSGALG00000010570 185.96 1496.81 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
88. NDUFA11 ENSGALG00000021692 184.25 1483.05 NADH:ubiquinone oxidoreductase subunit A11
89. RPL32 ENSGALG00000027142 182.54 1469.29 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
90. ATP6V1G1 ENSGALG00000007190 177.43 1428.16 ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
91. SNRPE ENSGALG00000000137 177.43 1428.16 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
92. PGK1 ENSGALG00000007936 176.57 1421.23 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
93. ENSGALG00000018384 ENSGALG00000018384 175.72 1414.39
94. MIF ENSGALG00000006326 175.72 1414.39 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
95. SEC61G ENSGALG00000037863 174.01 1400.63 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
96. RPL6 ENSGALG00000004818 173.16 1393.79 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
97. RPL37A ENSGALG00000011472 171.46 1380.10 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
98. CDC42 ENSGALG00000004796 166.34 1338.89 cell division cycle 42 [Source:NCBI gene;Acc:395917]
99. COX7C ENSGALG00000027963 164.63 1325.13 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
100. HNRNPA3 ENSGALG00000009250 162.92 1311.36 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA