Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s47.

Sample reads: 124,245. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4374.62 35213.49
2. MT-ATP6 MT-ATP6 3036.26 24440.36
3. EEF1A EEF1A 2367.85 19060.00
4. MT-ND5 MT-ND5 1968.35 15844.23
5. MT-CYB MT-CYB 1899.20 15287.60
6. GAPDH ENSGALG00000014442 1799.32 14483.62 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
7. MT-ND4 MT-ND4 1515.06 12195.47
8. gga-mir-3527 gga-mir-3527 1206.21 9709.38
9. MT-ND3 MT-ND3 1110.94 8942.51
10. RPS23 ENSGALG00000015617 935.77 7532.48 ribosomal protein S23
11. MT-ND1 MT-ND1 934.23 7520.08
12. NME2 ENSGALG00000002932 925.02 7445.95 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
13. MT-CO1 MT-CO1 820.53 6604.85
14. RPS6 ENSGALG00000015082 818.99 6592.46 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
15. PPIA ENSGALG00000028600 754.46 6073.02 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
16. gga-mir-3533 ENSGALG00000027736 725.26 5837.98 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
17. EIF4G2 ENSGALG00000005587 610.02 4910.35 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
18. RPL8 ENSGALG00000016232 610.02 4910.35 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
19. ENO1 ENSGALG00000002377 542.41 4366.13 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
20. RPL5 ENSGALG00000005922 525.51 4230.09 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
21. RPL26 RPL26 520.90 4192.98
22. RPL23 ENSGALG00000001634 508.60 4093.97 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
23. RPL7A ENSGALG00000003197 499.39 4019.84 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
24. TMSB4X ENSGALG00000026383 479.41 3859.01 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
25. RPL15 ENSGALG00000011290 470.19 3784.79 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
26. MDK ENSGALG00000008367 464.04 3735.29 midkine [Source:NCBI gene;Acc:423196]
27. CRABP-I ENSGALG00000003193 456.36 3673.47 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
28. RPS7 ENSGALG00000016392 453.29 3648.76 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
29. ENSGALG00000002696 ENSGALG00000002696 434.85 3500.32
30. LDHB ENSGALG00000035836 430.24 3463.22 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
31. RAN ENSGALG00000002569 424.09 3413.71 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
32. RPS12 ENSGALG00000013990 424.09 3413.71 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
33. RPS4 RPS4 416.41 3351.89
34. RPL7 ENSGALG00000035252 390.29 3141.64 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
35. ATP6V0C ENSGALG00000009229 371.85 2993.21 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
36. STMN1 ENSGALG00000001475 365.70 2943.70 stathmin 1 [Source:NCBI gene;Acc:396057]
37. CIRBP ENSGALG00000030918 361.09 2906.59 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
38. RPL18A 345.73 2782.95 ribosomal protein L18a
39. RPS3 ENSGALG00000017330 341.12 2745.84 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
40. RPL27A ENSGALG00000005948 333.44 2684.02 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
41. TCF12 ENSGALG00000004304 330.36 2659.23 transcription factor 12 [Source:NCBI gene;Acc:396334]
42. RPS27A ENSGALG00000036790 319.61 2572.70 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
43. RPS10 ENSGALG00000002813 318.07 2560.30 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
44. FKBP4 ENSGALG00000014331 316.53 2547.91 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
45. H3-IX H3-IX 315.00 2535.59
46. EEF1B2 ENSGALG00000008590 311.92 2510.80 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
47. RPSA 305.78 2461.38 ribosomal protein SA
48. H2AFZ ENSGALG00000014023 302.70 2436.58 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
49. ENSGALG00000028992 ENSGALG00000028992 299.63 2411.87
50. KPNA2 ENSGALG00000003584 299.63 2411.87 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
51. RPL14 ENSGALG00000043379 299.63 2411.87 ribosomal protein L14
52. RPS20 ENSGALG00000014432 288.88 2325.34 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
53. RPL27 ENSGALG00000002837 287.34 2312.94 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
54. RPS16 ENSGALG00000026490 284.27 2288.23 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
55. BTF3L4 ENSGALG00000010570 282.73 2275.83 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
56. TXN ENSGALG00000015704 275.05 2214.01 thioredoxin [Source:NCBI gene;Acc:396437]
57. RPL31 ENSGALG00000016775 273.51 2201.62 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
58. MEIS2 ENSGALG00000039118 270.44 2176.91 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
59. SLC25A6_1 ENSGALG00000016691 270.44 2176.91 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
60. RPLP1 ENSGALG00000030878 265.83 2139.80 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
61. RPL35A ENSGALG00000007611, ENSGALG00000041230 258.14 2077.90 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
62. SNRPE ENSGALG00000000137 258.14 2077.90 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
63. HMGN5 ENSGALG00000007131 256.61 2065.58 high mobility group nucleosome binding domain 5, transcript variant X1
64. RPL37 ENSGALG00000014833 256.61 2065.58 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
65. MIF ENSGALG00000006326 255.07 2053.19 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
66. RPL36 ENSGALG00000000474 255.07 2053.19 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
67. RPS24 ENSGALG00000004871 255.07 2053.19 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
68. RPL21 ENSGALG00000027035 252.00 2028.47 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
69. SNRPG ENSGALG00000028409 252.00 2028.47 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
70. RPS11 ENSGALG00000017299 250.46 2016.08 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
71. CRHOA CRHOA 248.92 2003.68
72. ANP32B ENSGALG00000037483 247.39 1991.36 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
73. RPS14 ENSGALG00000004588 247.39 1991.36 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
74. RPS8 ENSGALG00000010124 247.39 1991.36 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
75. MT-ND2 MT-ND2 241.24 1941.86
76. ATP5G3 239.70 1929.46 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
77. RPS15A ENSGALG00000006771 239.70 1929.46 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
78. EIF5A2 ENSGALG00000009309 238.17 1917.15 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
79. IGF2BP3 ENSGALG00000010961 235.10 1892.44 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
80. RPL38 ENSGALG00000001465 235.10 1892.44 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
81. HNRNPDL ENSGALG00000023199 232.02 1867.64 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
82. PGK1 ENSGALG00000007936 232.02 1867.64 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
83. ENSGALG00000018384 ENSGALG00000018384 227.41 1830.54
84. NDUFB9 ENSGALG00000042242 227.41 1830.54 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
85. RPS29 ENSGALG00000012229 225.88 1818.22 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
86. RPL13 ENSGALG00000006179 221.27 1781.11 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
87. RPL32 ENSGALG00000027142 221.27 1781.11 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
88. RPL6 ENSGALG00000004818 210.51 1694.50 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
89. HSPA8 ENSGALG00000006512 207.44 1669.79 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
90. EIF4A2 ENSGALG00000008684 205.90 1657.39 eukaryotic translation initiation factor 4A2 [Source:NCBI gene;Acc:395232]
91. CCT6 CCT6 204.36 1645.00
92. ALDH1A2 ENSGALG00000004270 201.29 1620.28 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
93. RPL29 ENSGALG00000026978 201.29 1620.28 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
94. CDK1 ENSGALG00000003085 198.22 1595.57 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
95. RPL10A ENSGALG00000002644 198.22 1595.57 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
96. HSPE1 ENSGALG00000009070 196.68 1583.18 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
97. ENSGALG00000018386 ENSGALG00000018386 181.32 1459.53
98. HMGB2 ENSGALG00000010745 179.78 1447.14 high mobility group box 2 [Source:NCBI gene;Acc:396482]
99. HNRNPA3 ENSGALG00000009250 178.24 1434.74 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
100. HSP90AA1 ENSGALG00000033212 176.71 1422.43 heat shock protein 90 alpha family class A member 1 [Source:NCBI gene;Acc:423463]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA