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Experiment Chicken_E3_posterior_slice_2, section s44.

Sample reads: 124,239. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 4272.05 34387.04
2. MT-CO3 MT-CO3 3564.99 28695.69
3. MT-ND5 MT-ND5 2209.26 17783.01
4. EEF1A EEF1A 2030.53 16344.36
5. GAPDH ENSGALG00000014442 1689.64 13600.43 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
6. MT-CYB MT-CYB 1671.33 13453.05
7. gga-mir-3527 gga-mir-3527 1374.03 11059.99
8. MT-ND4 MT-ND4 1234.54 9937.19
9. PPIA ENSGALG00000028600 1190.07 9579.24 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
10. gga-mir-3533 ENSGALG00000027736 938.11 7551.13 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. NME2 ENSGALG00000002932 918.06 7389.75 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
12. MT-ND1 MT-ND1 883.18 7108.99
13. RPS23 ENSGALG00000015617 816.05 6568.64 ribosomal protein S23
14. MT-CO1 MT-CO1 782.05 6294.96
15. MT-ND3 MT-ND3 751.53 6049.29
16. RPS6 ENSGALG00000015082 741.07 5965.10 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
17. EIF4G2 ENSGALG00000005587 653.01 5256.28 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
18. RPL8 ENSGALG00000016232 603.32 4856.31 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
19. RPS7 ENSGALG00000016392 572.80 4610.64 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
20. RPL26 RPL26 534.44 4301.87
21. ENO1 ENSGALG00000002377 523.98 4217.68 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
22. RPL23 ENSGALG00000001634 517.88 4168.57 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
23. MDK ENSGALG00000008367 505.67 4070.29 midkine [Source:NCBI gene;Acc:423196]
24. RPL5 ENSGALG00000005922 481.26 3873.81 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
25. CRABP-I ENSGALG00000003193 465.57 3747.52 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
26. RPL15 ENSGALG00000011290 455.98 3670.32 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
27. ENSGALG00000002696 ENSGALG00000002696 449.87 3621.14
28. STMN1 ENSGALG00000001475 447.26 3600.13 stathmin 1 [Source:NCBI gene;Acc:396057]
29. RPL27A ENSGALG00000005948 442.03 3558.03 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
30. TMSB4X ENSGALG00000026383 433.31 3487.84 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
31. CIRBP ENSGALG00000030918 421.97 3396.57 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
32. RAN ENSGALG00000002569 415.87 3347.46 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
33. RPS27A ENSGALG00000036790 410.64 3305.37 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
34. RPL7A ENSGALG00000003197 406.28 3270.27 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
35. RPL18A 402.79 3242.18 ribosomal protein L18a
36. RPS20 ENSGALG00000014432 377.51 3038.69 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
37. RPS12 ENSGALG00000013990 376.64 3031.69 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
38. TCF12 ENSGALG00000004304 369.66 2975.51 transcription factor 12 [Source:NCBI gene;Acc:396334]
39. ATP6V0C ENSGALG00000009229 367.92 2961.50 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
40. RPS4 RPS4 360.94 2905.32
41. RPL31 ENSGALG00000016775 354.84 2856.22 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
42. LDHB ENSGALG00000035836 352.23 2835.21 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
43. RPS16 ENSGALG00000026490 342.64 2758.01 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
44. RPL7 ENSGALG00000035252 337.41 2715.92 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
45. SNRPG ENSGALG00000028409 336.53 2708.83 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
46. FKBP4 ENSGALG00000014331 317.35 2554.45 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
47. H3-IX H3-IX 315.61 2540.44
48. SLC25A6_1 ENSGALG00000016691 314.74 2533.44 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
49. RPS10 ENSGALG00000002813 310.38 2498.34 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
50. EEF1B2 ENSGALG00000008590 305.15 2456.25 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
51. ATP5G3 304.27 2449.16 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
52. H2AFZ ENSGALG00000014023 296.43 2386.06 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
53. HMGN5 ENSGALG00000007131 295.56 2379.05 high mobility group nucleosome binding domain 5, transcript variant X1
54. KPNA2 ENSGALG00000003584 294.68 2371.97 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
55. RPL14 ENSGALG00000043379 288.58 2322.87 ribosomal protein L14
56. RPL27 ENSGALG00000002837 276.38 2224.67 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
57. RPL36 ENSGALG00000000474 271.14 2182.49 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
58. RPLP1 ENSGALG00000030878 269.40 2168.48 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
59. RPL38 ENSGALG00000001465 268.53 2161.48 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
60. CRHOA CRHOA 264.17 2126.39
61. RPS29 ENSGALG00000012229 260.68 2098.29 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
62. ENSGALG00000028992 ENSGALG00000028992 254.58 2049.19
63. RPL37 ENSGALG00000014833 254.58 2049.19 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
64. SNRPE ENSGALG00000000137 253.71 2042.19 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
65. MIF ENSGALG00000006326 249.35 2007.09 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
66. RPS8 ENSGALG00000010124 249.35 2007.09 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
67. RPS24 ENSGALG00000004871 245.86 1979.00 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
68. PGK1 ENSGALG00000007936 244.99 1972.00 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
69. RPS21 ENSGALG00000005338 242.37 1950.91 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
70. TXN ENSGALG00000015704 242.37 1950.91 thioredoxin [Source:NCBI gene;Acc:396437]
71. HSPE1 ENSGALG00000009070 241.50 1943.91 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
72. RPS11 ENSGALG00000017299 241.50 1943.91 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
73. RPS3 ENSGALG00000017330 241.50 1943.91 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
74. BTF3L4 ENSGALG00000010570 240.63 1936.90 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
75. RPL23A ENSGALG00000003966 239.76 1929.90 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
76. RPL35A ENSGALG00000007611, ENSGALG00000041230 231.91 1866.71 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
77. IGF2BP3 ENSGALG00000010961 227.55 1831.62 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
78. RPL3 ENSGALG00000012172 227.55 1831.62 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
79. EIF1 ENSGALG00000028517 225.81 1817.61 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
80. RPL21 ENSGALG00000027035 225.81 1817.61 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
81. HNRNPDL ENSGALG00000023199 224.94 1810.61 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
82. NDUFB9 ENSGALG00000042242 223.19 1796.52 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
83. RPL10A ENSGALG00000002644 217.96 1754.43 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
84. RPSA 217.09 1747.42 ribosomal protein SA
85. RPS15 ENSGALG00000015195 210.12 1691.32 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
86. MT-ND2 MT-ND2 209.24 1684.24
87. RPS15A ENSGALG00000006771 204.88 1649.14 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
88. ALDH1A2 ENSGALG00000004270 204.01 1642.14 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
89. RPL13 ENSGALG00000006179 203.14 1635.14 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
90. RPS14 ENSGALG00000004588 203.14 1635.14 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
91. RPL29 ENSGALG00000026978 200.52 1614.05 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
92. ANP32B ENSGALG00000037483 198.78 1600.04 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
93. HMGB1 ENSGALG00000042875 196.17 1579.03 high mobility group box 1 [Source:NCBI gene;Acc:395724]
94. NONO ENSGALG00000005507 192.68 1550.94 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
95. RPLP2 ENSGALG00000034811 192.68 1550.94 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
96. CCT6 CCT6 190.06 1529.85
97. PRDX1 ENSGALG00000010243 188.32 1515.85 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
98. HNRNPA3 ENSGALG00000009250 187.45 1508.84 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
99. CDK1 ENSGALG00000003085 185.70 1494.76 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
100. MEIS2 ENSGALG00000039118 184.83 1487.75 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA