Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s42.

Sample reads: 124,245. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4509.53 36298.36
2. MT-ATP6 MT-ATP6 3810.26 30669.76
3. MT-ND5 MT-ND5 3443.90 27720.83
4. MT-CYB MT-CYB 2313.59 18622.68
5. EEF1A EEF1A 2139.06 17217.84
6. GAPDH ENSGALG00000014442 1680.13 13523.80 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
7. MT-ND4 MT-ND4 1601.50 12890.88
8. gga-mir-3527 gga-mir-3527 1430.87 11517.44
9. PPIA ENSGALG00000028600 1302.06 10480.61 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
10. gga-mir-3533 ENSGALG00000027736 1253.54 10090.06 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. MT-ND1 MT-ND1 938.49 7554.15
12. RPS23 ENSGALG00000015617 805.21 6481.34 ribosomal protein S23
13. MT-CO1 MT-CO1 732.72 5897.85
14. MT-ND3 MT-ND3 700.38 5637.54
15. RPS6 ENSGALG00000015082 695.92 5601.64 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
16. NME2 ENSGALG00000002932 674.17 5426.57 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
17. EIF4G2 ENSGALG00000005587 576.03 4636.61 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
18. TMSB4X ENSGALG00000026383 557.63 4488.51 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
19. RPL5 ENSGALG00000005922 533.65 4295.49 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
20. RPL8 ENSGALG00000016232 520.82 4192.21 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
21. RPS7 ENSGALG00000016392 516.92 4160.82 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
22. RPL15 ENSGALG00000011290 485.14 3905.02 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
23. RPL26 RPL26 443.31 3568.32
24. ENSGALG00000002696 ENSGALG00000002696 431.60 3474.06
25. RPS27A ENSGALG00000036790 418.22 3366.36 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
26. MDK ENSGALG00000008367 416.55 3352.92 midkine [Source:NCBI gene;Acc:423196]
27. STMN1 ENSGALG00000001475 411.53 3312.51 stathmin 1 [Source:NCBI gene;Acc:396057]
28. RPL27A ENSGALG00000005948 410.41 3303.50 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
29. ENO1 ENSGALG00000002377 404.28 3254.15 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
30. RPL7A ENSGALG00000003197 380.86 3065.64 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
31. RPL18A 365.80 2944.42 ribosomal protein L18a
32. ATP6V0C ENSGALG00000009229 358.55 2886.06 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
33. RPL23 ENSGALG00000001634 355.21 2859.18 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
34. RAN ENSGALG00000002569 351.30 2827.70 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
35. RPS16 ENSGALG00000026490 346.29 2787.38 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
36. CIRBP ENSGALG00000030918 344.06 2769.43 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
37. RPL31 ENSGALG00000016775 336.81 2711.07 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
38. ATP5G3 302.79 2437.23 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
39. RPS12 ENSGALG00000013990 302.23 2432.73 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
40. RPL7 ENSGALG00000035252 297.22 2392.40 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
41. RPS4 RPS4 294.43 2369.94
42. SLC25A6_1 ENSGALG00000016691 293.31 2360.93 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
43. SNRPG ENSGALG00000028409 289.97 2334.04 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
44. RPLP1 ENSGALG00000030878 284.95 2293.64 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
45. RPS10 ENSGALG00000002813 284.95 2293.64 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
46. FKBP4 ENSGALG00000014331 284.39 2289.13 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
47. H3-IX H3-IX 282.16 2271.18
48. H2AFZ ENSGALG00000014023 280.49 2257.74 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
49. RPS3 ENSGALG00000017330 271.01 2181.43 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
50. RPS20 ENSGALG00000014432 269.89 2172.41 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
51. RPL14 ENSGALG00000043379 262.64 2114.06 ribosomal protein L14
52. RPS8 ENSGALG00000010124 262.08 2109.55 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
53. SNRPE ENSGALG00000000137 261.53 2105.12 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
54. EEF1B2 ENSGALG00000008590 258.18 2078.16 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
55. RPL35A ENSGALG00000007611, ENSGALG00000041230 257.62 2073.65 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
56. HMGN5 ENSGALG00000007131 255.95 2060.21 high mobility group nucleosome binding domain 5, transcript variant X1
57. EIF1 ENSGALG00000028517 255.39 2055.70 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
58. RPL27 ENSGALG00000002837 254.84 2051.27 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
59. CRHOA CRHOA 242.57 1952.51
60. RPL38 ENSGALG00000001465 240.89 1938.99 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
61. ALDH1A2 ENSGALG00000004270 239.78 1930.05 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
62. KPNA2 ENSGALG00000003584 234.20 1885.14 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
63. RPS11 ENSGALG00000017299 233.09 1876.20 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
64. EIF5A2 ENSGALG00000009309 231.42 1862.76 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
65. MT-ND2 MT-ND2 230.86 1858.25
66. RPS14 ENSGALG00000004588 230.86 1858.25 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
67. RPL36 ENSGALG00000000474 227.51 1831.29 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
68. ENSGALG00000018384 ENSGALG00000018384 226.95 1826.78
69. RPL37 ENSGALG00000014833 225.84 1817.84 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
70. RPS24 ENSGALG00000004871 223.61 1799.89 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
71. NDUFB9 ENSGALG00000042242 221.38 1781.94 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
72. LDHB ENSGALG00000035836 220.26 1772.93 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
73. BTF3L4 ENSGALG00000010570 218.59 1759.49 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
74. ANP32B ENSGALG00000037483 217.47 1750.47 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
75. RPL21 ENSGALG00000027035 216.92 1746.04 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
76. TXN ENSGALG00000015704 211.90 1705.64 thioredoxin [Source:NCBI gene;Acc:396437]
77. RPL10A ENSGALG00000002644 209.67 1687.69 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
78. RPL32 ENSGALG00000027142 209.67 1687.69 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
79. ENSGALG00000028992 ENSGALG00000028992 209.11 1683.18
80. HSPE1 ENSGALG00000009070 206.88 1665.23 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
81. IGF2BP3 ENSGALG00000010961 205.76 1656.21 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
82. RPS15A ENSGALG00000006771 203.53 1638.27 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
83. RPS29 ENSGALG00000012229 203.53 1638.27 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
84. MEIS2 ENSGALG00000039118 199.63 1606.87 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
85. RPL3 ENSGALG00000012172 199.63 1606.87 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
86. HNRNPDL ENSGALG00000023199 199.07 1602.37 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
87. TCF12 ENSGALG00000004304 197.40 1588.92 transcription factor 12 [Source:NCBI gene;Acc:396334]
88. MIF ENSGALG00000006326 196.28 1579.91 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
89. RPSA 196.28 1579.91 ribosomal protein SA
90. RPL13 ENSGALG00000006179 195.17 1570.97 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
91. HSPA8 ENSGALG00000006512 192.94 1553.02 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
92. RPL4 ENSGALG00000007711 191.27 1539.58 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
93. HMGB1 ENSGALG00000042875 190.71 1535.07 high mobility group box 1 [Source:NCBI gene;Acc:395724]
94. RPL12 ENSGALG00000008806 184.02 1481.22 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
95. RPL23A ENSGALG00000003966 182.90 1472.21 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
96. HNRNPA3 ENSGALG00000009250 180.11 1449.75 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
97. RPS15 ENSGALG00000015195 179.56 1445.32 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
98. NONO ENSGALG00000005507 176.77 1422.87 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
99. RPL6 ENSGALG00000004818 175.65 1413.85 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
100. HMGN2 HMGN2 170.63 1373.44
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA