Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s41.

Sample reads: 124,236. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 4133.66 33274.13
2. MT-CO3 MT-CO3 4085.23 32884.29
3. MT-ND5 MT-ND5 2936.69 23639.05
4. EEF1A EEF1A 2306.22 18564.05
5. MT-CYB MT-CYB 2253.23 18137.50
6. MT-ND4 MT-ND4 1751.60 14099.60
7. GAPDH ENSGALG00000014442 1584.39 12753.64 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
8. gga-mir-3527 gga-mir-3527 1517.68 12216.65
9. PPIA ENSGALG00000028600 995.04 8009.63 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
10. gga-mir-3533 ENSGALG00000027736 949.35 7641.85 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. MT-ND1 MT-ND1 943.87 7597.74
12. MT-ND3 MT-ND3 939.30 7560.95
13. NME2 ENSGALG00000002932 856.15 6891.63 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. MT-CO1 MT-CO1 834.22 6715.10
15. RPS23 ENSGALG00000015617 814.12 6553.31 ribosomal protein S23
16. RPS6 ENSGALG00000015082 667.01 5369.13 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
17. TMSB4X ENSGALG00000026383 642.34 5170.55 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
18. EIF4G2 ENSGALG00000005587 602.14 4846.96 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
19. RPL8 ENSGALG00000016232 527.22 4243.89 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
20. RPL26 RPL26 502.54 4045.22
21. RPS7 ENSGALG00000016392 472.39 3802.53 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
22. RPL7A ENSGALG00000003197 444.98 3581.89 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
23. ENO1 ENSGALG00000002377 442.24 3559.84 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
24. ATP6V0C ENSGALG00000009229 441.33 3552.51 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
25. RPL23 ENSGALG00000001634 427.62 3442.15 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
26. MDK ENSGALG00000008367 426.71 3434.83 midkine [Source:NCBI gene;Acc:423196]
27. RPL5 ENSGALG00000005922 422.14 3398.04 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
28. STMN1 ENSGALG00000001475 395.64 3184.73 stathmin 1 [Source:NCBI gene;Acc:396057]
29. FKBP4 ENSGALG00000014331 375.54 3022.93 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
30. RPS27A ENSGALG00000036790 363.66 2927.30 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
31. RAN ENSGALG00000002569 354.52 2853.73 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
32. RPL15 ENSGALG00000011290 352.69 2839.00 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
33. RPL7 ENSGALG00000035252 349.95 2816.94 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
34. ENSGALG00000002696 ENSGALG00000002696 344.47 2772.83
35. CIRBP ENSGALG00000030918 343.56 2765.51 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
36. H3-IX H3-IX 336.25 2706.66
37. RPL31 ENSGALG00000016775 335.33 2699.26 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
38. RPS3 ENSGALG00000017330 334.42 2691.93 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
39. RPS4 RPS4 334.42 2691.93
40. RPL18A 329.85 2655.15 ribosomal protein L18a
41. RPL27A ENSGALG00000005948 313.41 2522.81 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
42. RPS16 ENSGALG00000026490 307.92 2478.62 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
43. KPNA2 ENSGALG00000003584 305.18 2456.56 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
44. EEF1B2 ENSGALG00000008590 300.61 2419.78 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
45. SLC25A6_1 ENSGALG00000016691 300.61 2419.78 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
46. RPS12 ENSGALG00000013990 293.30 2360.94 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
47. LDHB ENSGALG00000035836 289.65 2331.55 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
48. RPL36 ENSGALG00000000474 289.65 2331.55 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
49. H2AFZ ENSGALG00000014023 288.73 2324.15 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
50. RPS10 ENSGALG00000002813 281.43 2265.39 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
51. RPL37 ENSGALG00000014833 277.77 2235.93 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
52. RPL14 ENSGALG00000043379 272.29 2191.81 ribosomal protein L14
53. RPL35A ENSGALG00000007611, ENSGALG00000041230 270.46 2177.08 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
54. RPS20 ENSGALG00000014432 268.63 2162.35 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
55. TXN ENSGALG00000015704 268.63 2162.35 thioredoxin [Source:NCBI gene;Acc:396437]
56. HMGN5 ENSGALG00000007131 266.81 2147.70 high mobility group nucleosome binding domain 5, transcript variant X1
57. CRHOA CRHOA 264.06 2125.57
58. SNRPE ENSGALG00000000137 263.15 2118.24 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
59. IGF2BP3 ENSGALG00000010961 257.67 2074.13 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
60. MT-ND2 MT-ND2 252.19 2030.02
61. SNRPG ENSGALG00000028409 252.19 2030.02 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
62. ATP5G3 251.27 2022.61 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
63. RPS8 ENSGALG00000010124 245.79 1978.50 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
64. HNRNPDL ENSGALG00000023199 243.96 1963.77 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
65. RPS14 ENSGALG00000004588 234.83 1890.28 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
66. HNRNPA3 ENSGALG00000009250 226.60 1824.03 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
67. RPL27 ENSGALG00000002837 224.77 1809.30 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
68. RPL38 ENSGALG00000001465 219.29 1765.19 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
69. RPSA 216.55 1743.13 ribosomal protein SA
70. ENSGALG00000028992 ENSGALG00000028992 214.72 1728.40
71. EIF5A2 ENSGALG00000009309 213.81 1721.08 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
72. ENSGALG00000018384 ENSGALG00000018384 213.81 1721.08
73. RPS29 ENSGALG00000012229 212.90 1713.75 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
74. RPLP1 ENSGALG00000030878 211.07 1699.02 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
75. RPL21 ENSGALG00000027035 207.41 1669.56 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
76. RPL3 ENSGALG00000012172 205.59 1654.91 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
77. RPS24 ENSGALG00000004871 200.10 1610.72 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
78. RPS11 ENSGALG00000017299 199.19 1603.39 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
79. HSPA8 ENSGALG00000006512 198.28 1596.07 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
80. EIF1 ENSGALG00000028517 192.79 1551.87 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
81. HMGB1 ENSGALG00000042875 192.79 1551.87 high mobility group box 1 [Source:NCBI gene;Acc:395724]
82. ANP32B ENSGALG00000037483 190.05 1529.82 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
83. RPL29 ENSGALG00000026978 190.05 1529.82 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
84. YWHAZ ENSGALG00000031387 188.23 1515.17 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
85. CCT6 CCT6 186.40 1500.44
86. MIF ENSGALG00000006326 184.57 1485.71 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
87. NDUFB9 ENSGALG00000042242 184.57 1485.71 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
88. HSPE1 ENSGALG00000009070 182.74 1470.98 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
89. RPL32 ENSGALG00000027142 181.83 1463.65 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
90. BTF3L4 ENSGALG00000010570 180.00 1448.92 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
91. HMGB2 ENSGALG00000010745 180.00 1448.92 high mobility group box 2 [Source:NCBI gene;Acc:396482]
92. RPS15A ENSGALG00000006771 178.17 1434.19 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
93. RPS21 ENSGALG00000005338 174.52 1404.81 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
94. RPL13 ENSGALG00000006179 169.95 1368.02 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
95. TCF12 ENSGALG00000004304 169.04 1360.70 transcription factor 12 [Source:NCBI gene;Acc:396334]
96. CDK1 ENSGALG00000003085 167.21 1345.97 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
97. EIF4A2 ENSGALG00000008684 167.21 1345.97 eukaryotic translation initiation factor 4A2 [Source:NCBI gene;Acc:395232]
98. PDIA6 ENSGALG00000016447 167.21 1345.97 protein disulfide isomerase family A member 6 [Source:HGNC Symbol;Acc:HGNC:30168]
99. RPS15 ENSGALG00000015195 164.47 1323.91 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
100. NONO ENSGALG00000005507 162.64 1309.18 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA