Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s40.

Sample reads: 124,237. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 4617.33 37165.56
2. MT-CO3 MT-CO3 3530.44 28417.03
3. MT-ND5 MT-ND5 3243.19 26104.91
4. gga-mir-3527 gga-mir-3527 2410.56 19402.95
5. MT-ND4 MT-ND4 2286.34 18403.08
6. MT-CYB MT-CYB 2125.25 17106.45
7. EEF1A EEF1A 1977.75 15919.20
8. PPIA ENSGALG00000028600 1843.83 14841.26 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
9. MT-ND1 MT-ND1 1506.12 12122.98
10. GAPDH ENSGALG00000014442 1449.83 11669.89 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. MT-ND3 MT-ND3 1327.56 10685.72
12. RPS23 ENSGALG00000015617 1034.48 8326.68 ribosomal protein S23
13. NME2 ENSGALG00000002932 931.62 7498.74 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. MT-CO1 MT-CO1 809.34 6514.50
15. gga-mir-3533 ENSGALG00000027736 716.18 5764.64 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
16. ENO1 ENSGALG00000002377 591.97 4764.85 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
17. RPS10 ENSGALG00000002813 591.97 4764.85 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
18. RPS7 ENSGALG00000016392 551.21 4436.77 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
19. RPL18A 529.86 4264.92 ribosomal protein L18a
20. RPL7 ENSGALG00000035252 504.63 4061.84 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
21. RPL36 ENSGALG00000000474 502.69 4046.22 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
22. RPS4 RPS4 496.86 3999.30
23. RPL5 ENSGALG00000005922 479.39 3858.68 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
24. RPL15 ENSGALG00000011290 473.57 3811.83 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
25. RPS3 ENSGALG00000017330 465.81 3749.37 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
26. RPL31 ENSGALG00000016775 456.10 3671.22 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
27. RPS29 ENSGALG00000012229 434.75 3499.37 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
28. RPL37 ENSGALG00000014833 423.11 3405.67 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
29. EIF4G2 ENSGALG00000005587 419.23 3374.44 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
30. RPS16 ENSGALG00000026490 413.41 3327.60 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
31. RPL27 ENSGALG00000002837 395.94 3186.98 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
32. RPL7A ENSGALG00000003197 394.00 3171.36 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
33. KPNA2 ENSGALG00000003584 392.06 3155.75 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
34. TMSB4X ENSGALG00000026383 388.17 3124.44 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
35. RPL23 ENSGALG00000001634 378.47 3046.36 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
36. RPL27A ENSGALG00000005948 378.47 3046.36 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
37. RPL8 ENSGALG00000016232 376.53 3030.74 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
38. RPS11 ENSGALG00000017299 372.65 2999.51 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
39. RPS6 ENSGALG00000015082 370.71 2983.90 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
40. RPL35A ENSGALG00000007611, ENSGALG00000041230 362.94 2921.36 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
41. RPLP1 ENSGALG00000030878 361.00 2905.74 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
42. RAN ENSGALG00000002569 359.06 2890.13 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
43. SLC25A6_1 ENSGALG00000016691 351.30 2827.66 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
44. ENSGALG00000002696 ENSGALG00000002696 347.42 2796.43
45. RPL26 RPL26 347.42 2796.43
46. STMN1 ENSGALG00000001475 345.47 2780.74 stathmin 1 [Source:NCBI gene;Acc:396057]
47. FKBP4 ENSGALG00000014331 343.53 2765.12 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
48. LDHB ENSGALG00000035836 343.53 2765.12 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
49. RPS21 ENSGALG00000005338 343.53 2765.12 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
50. ATP5G3 341.59 2749.51 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
51. RPS24 ENSGALG00000004871 337.71 2718.28 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
52. RPS27A ENSGALG00000036790 337.71 2718.28 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
53. RPL14 ENSGALG00000043379 326.07 2624.58 ribosomal protein L14
54. RPL23A ENSGALG00000003966 310.54 2499.58 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
55. HSPA8 ENSGALG00000006512 304.72 2452.74 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
56. ATP6V0C ENSGALG00000009229 298.89 2405.81 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
57. MT-ND2 MT-ND2 295.01 2374.58
58. EEF1B2 ENSGALG00000008590 293.07 2358.96 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
59. CIRBP ENSGALG00000030918 287.25 2312.12 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
60. RPS15 ENSGALG00000015195 287.25 2312.12 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
61. RPS17 ENSGALG00000002157 285.31 2296.50 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
62. MDK ENSGALG00000008367 283.37 2280.89 midkine [Source:NCBI gene;Acc:423196]
63. RPSA 273.66 2202.73 ribosomal protein SA
64. RPL38 ENSGALG00000001465 269.78 2171.50 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
65. RPS14 ENSGALG00000004588 269.78 2171.50 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
66. RPL29 ENSGALG00000026978 267.84 2155.88 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
67. RPL13 ENSGALG00000006179 263.96 2124.65 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
68. RPS15A ENSGALG00000006771 246.49 1984.03 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
69. PRDX1 ENSGALG00000010243 234.85 1890.34 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
70. EIF1 ENSGALG00000028517 232.90 1874.65 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
71. H3-IX H3-IX 230.96 1859.03
72. SNRPG ENSGALG00000028409 230.96 1859.03 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
73. BTF3L4 ENSGALG00000010570 219.32 1765.34 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
74. CDC42 ENSGALG00000004796 217.38 1749.72 cell division cycle 42 [Source:NCBI gene;Acc:395917]
75. EEF1D 217.38 1749.72 eukaryotic translation elongation factor 1 delta, transcript variant X13
76. TXN ENSGALG00000015704 217.38 1749.72 thioredoxin [Source:NCBI gene;Acc:396437]
77. CRHOA CRHOA 215.44 1734.11
78. SEC61G ENSGALG00000037863 213.50 1718.49 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
79. SNRPE ENSGALG00000000137 209.61 1687.18 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
80. TCEB3 ENSGALG00000034625 209.61 1687.18 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
81. H2AFZ ENSGALG00000014023 207.67 1671.57 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
82. RPL37A ENSGALG00000011472 199.91 1609.10 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
83. TPT1 ENSGALG00000028872 199.91 1609.10 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
84. HSPE1 ENSGALG00000009070 197.97 1593.49 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
85. NDUFB9 ENSGALG00000042242 197.97 1593.49 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
86. ATP6V1G1 ENSGALG00000007190 194.09 1562.26 ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
87. RPS12 ENSGALG00000013990 192.15 1546.64 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
88. PDIA6 ENSGALG00000016447 186.32 1499.72 protein disulfide isomerase family A member 6 [Source:HGNC Symbol;Acc:HGNC:30168]
89. RPL21 ENSGALG00000027035 184.38 1484.10 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
90. YWHAZ ENSGALG00000031387 182.44 1468.49 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
91. CCT6 CCT6 180.50 1452.87
92. PGK1 ENSGALG00000007936 180.50 1452.87 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
93. HMGN5 ENSGALG00000007131 176.62 1421.64 high mobility group nucleosome binding domain 5, transcript variant X1
94. MIF ENSGALG00000006326 174.68 1406.02 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
95. RPL32 ENSGALG00000027142 174.68 1406.02 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
96. NDUFA11 ENSGALG00000021692 172.74 1390.41 NADH:ubiquinone oxidoreductase subunit A11
97. RPS8 ENSGALG00000010124 170.80 1374.79 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
98. EIF4A2 ENSGALG00000008684 168.86 1359.18 eukaryotic translation initiation factor 4A2 [Source:NCBI gene;Acc:395232]
99. ENSGALG00000028992 ENSGALG00000028992 168.86 1359.18
100. RPS20 ENSGALG00000014432 168.86 1359.18 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA