Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s38.

Sample reads: 124,242. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 6351.19 51124.23
2. MT-CO3 MT-CO3 4564.52 36742.34
3. MT-ND5 MT-ND5 4184.46 33683.02
4. MT-CYB MT-CYB 2385.17 19199.55
5. EEF1A EEF1A 1876.32 15103.53
6. MT-ND4 MT-ND4 1758.89 14158.27
7. gga-mir-3527 gga-mir-3527 1565.70 12603.18
8. GAPDH ENSGALG00000014442 1404.08 11302.21 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
9. MT-ND1 MT-ND1 1372.51 11048.09
10. gga-mir-3533 ENSGALG00000027736 1252.56 10082.55 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. PPIA ENSGALG00000028600 1155.34 9299.97 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
12. MT-CO1 MT-CO1 882.60 7104.53
13. NME2 ENSGALG00000002932 849.77 6840.27 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. MT-ND3 MT-ND3 796.74 6413.40
15. RPS23 ENSGALG00000015617 744.97 5996.67 ribosomal protein S23
16. RPS6 ENSGALG00000015082 638.91 5142.94 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
17. RPL15 ENSGALG00000011290 633.86 5102.29 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
18. TMSB4X ENSGALG00000026383 577.04 4644.91 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
19. RPL5 ENSGALG00000005922 545.47 4390.79 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
20. EIF4G2 ENSGALG00000005587 501.28 4035.08 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
21. RPS7 ENSGALG00000016392 477.29 3841.97 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
22. RPL8 ENSGALG00000016232 438.14 3526.83 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
23. RPL7 ENSGALG00000035252 436.88 3516.69 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
24. STMN1 ENSGALG00000001475 428.04 3445.53 stathmin 1 [Source:NCBI gene;Acc:396057]
25. ENO1 ENSGALG00000002377 417.94 3364.23 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
26. ENSGALG00000002696 ENSGALG00000002696 392.69 3160.98
27. CIRBP ENSGALG00000030918 387.64 3120.33 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
28. RPL26 RPL26 380.06 3059.31
29. RPL18A 364.91 2937.36 ribosomal protein L18a
30. RPL27A ENSGALG00000005948 345.97 2784.90 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
31. RPS16 ENSGALG00000026490 340.92 2744.25 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
32. RPL7A ENSGALG00000003197 321.98 2591.79 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
33. RPS27A ENSGALG00000036790 319.45 2571.43 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
34. RPL31 ENSGALG00000016775 316.93 2551.14 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
35. RPS3 ENSGALG00000017330 314.40 2530.78 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
36. RPL14 ENSGALG00000043379 309.35 2490.13 ribosomal protein L14
37. RPS20 ENSGALG00000014432 300.51 2418.97 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
38. RPL37 ENSGALG00000014833 299.25 2408.83 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
39. HBG1 HBG1 297.99 2398.69
40. RPS12 ENSGALG00000013990 289.15 2327.53 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
41. RPS4 RPS4 284.10 2286.88
42. RAN ENSGALG00000002569 282.84 2276.74 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
43. SLC25A6_1 ENSGALG00000016691 276.52 2225.86 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
44. LDHB ENSGALG00000035836 275.26 2215.72 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
45. RPL21 ENSGALG00000027035 274.00 2205.58 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
46. H2AFZ ENSGALG00000014023 272.74 2195.43 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
47. RPS11 ENSGALG00000017299 265.16 2134.42 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
48. ENSGALG00000028992 ENSGALG00000028992 262.63 2114.05
49. FKBP4 ENSGALG00000014331 258.85 2083.63 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
50. RPS8 ENSGALG00000010124 255.06 2053.12 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
51. RPL27 ENSGALG00000002837 253.80 2042.98 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
52. KPNA2 ENSGALG00000003584 248.74 2002.25 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
53. ATP5G3 247.48 1992.10 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
54. H3-IX H3-IX 246.22 1981.96
55. RPL36 ENSGALG00000000474 246.22 1981.96 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
56. RPLP1 ENSGALG00000030878 244.96 1971.82 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
57. MT-ND2 MT-ND2 242.43 1951.45
58. HBE 236.12 1900.66 hemoglobin subunit epsilon
59. RPS24 ENSGALG00000004871 234.86 1890.52 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
60. HMGN5 ENSGALG00000007131 233.59 1880.29 high mobility group nucleosome binding domain 5, transcript variant X1
61. RPL32 ENSGALG00000027142 233.59 1880.29 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
62. RPS14 ENSGALG00000004588 231.07 1860.01 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
63. EEF1B2 ENSGALG00000008590 229.80 1849.79 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
64. EIF5A2 ENSGALG00000009309 229.80 1849.79 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
65. RPS10 ENSGALG00000002813 226.02 1819.36 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
66. EIF1 ENSGALG00000028517 223.49 1798.99 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
67. MDK ENSGALG00000008367 223.49 1798.99 midkine [Source:NCBI gene;Acc:423196]
68. RPL38 ENSGALG00000001465 218.44 1758.34 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
69. RPS29 ENSGALG00000012229 218.44 1758.34 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
70. NDUFB9 ENSGALG00000042242 215.92 1738.06 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
71. SNRPE ENSGALG00000000137 213.39 1717.69 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
72. CRHOA CRHOA 209.60 1687.19
73. HNRNPDL ENSGALG00000023199 208.34 1677.04 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
74. RPL4 ENSGALG00000007711 208.34 1677.04 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
75. RPL13 ENSGALG00000006179 205.81 1656.68 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
76. HMGN2 HMGN2 204.55 1646.54
77. RPL35A ENSGALG00000007611, ENSGALG00000041230 204.55 1646.54 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
78. HNRNPA3 ENSGALG00000009250 203.29 1636.39 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
79. RPS15 ENSGALG00000015195 203.29 1636.39 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
80. SNRPG ENSGALG00000028409 203.29 1636.39 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
81. IGF2BP3 ENSGALG00000010961 202.03 1626.25 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
82. TXN ENSGALG00000015704 202.03 1626.25 thioredoxin [Source:NCBI gene;Acc:396437]
83. RPL3 ENSGALG00000012172 199.50 1605.89 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
84. TPT1 ENSGALG00000028872 198.24 1595.74 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
85. RPL10A ENSGALG00000002644 196.98 1585.60 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
86. RPSA 193.19 1555.09 ribosomal protein SA
87. RPL12 ENSGALG00000008806 191.92 1544.87 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
88. ATP6V0C ENSGALG00000009229 190.66 1534.73 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
89. ANP32B ENSGALG00000037483 186.87 1504.22 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
90. HSPA8 ENSGALG00000006512 179.30 1443.28 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
91. RPS15A ENSGALG00000006771 179.30 1443.28 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
92. HBZ ENSGALG00000023740 178.04 1433.14 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
93. EIF3F ENSGALG00000005326 175.51 1412.78 eukaryotic translation initiation factor 3 subunit F
94. RPL23A ENSGALG00000003966 175.51 1412.78 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
95. RPS21 ENSGALG00000005338 175.51 1412.78 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
96. RPLP2 ENSGALG00000034811 170.46 1372.13 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
97. EEF1D 169.20 1361.98 eukaryotic translation elongation factor 1 delta, transcript variant X13
98. RPL37A ENSGALG00000011472 169.20 1361.98 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
99. PRDX1 ENSGALG00000010243 165.41 1331.48 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
100. BTF3L4 ENSGALG00000010570 161.62 1300.97 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA