Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s37.

Sample reads: 124,246. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 4818.64 38785.57
2. MT-CO3 MT-CO3 3800.17 30587.83
3. MT-ND5 MT-ND5 3684.75 29658.81
4. MT-CYB MT-CYB 2245.80 18076.60
5. EEF1A EEF1A 2196.89 17682.92
6. GAPDH ENSGALG00000014442 1615.37 13002.23 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
7. MT-ND4 MT-ND4 1612.08 12975.74
8. PPIA ENSGALG00000028600 1341.11 10794.69 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
9. MT-ND1 MT-ND1 1238.33 9967.40
10. gga-mir-3527 gga-mir-3527 1126.75 9069.29
11. gga-mir-3533 ENSGALG00000027736 1020.67 8215.44 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. MT-ND3 MT-ND3 846.44 6813.05
13. RPS23 ENSGALG00000015617 834.89 6720.09 ribosomal protein S23
14. MT-CO1 MT-CO1 832.15 6698.03
15. NME2 ENSGALG00000002932 828.85 6671.47 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
16. EIF4G2 ENSGALG00000005587 623.83 5021.25 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
17. RPS6 ENSGALG00000015082 613.39 4937.22 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
18. TMSB4X ENSGALG00000026383 562.28 4525.83 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
19. ENO1 ENSGALG00000002377 518.85 4176.26 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
20. RPS7 ENSGALG00000016392 515.56 4149.78 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
21. RPL8 ENSGALG00000016232 483.13 3888.75 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
22. RPL5 ENSGALG00000005922 445.20 3583.45 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
23. STMN1 ENSGALG00000001475 414.97 3340.12 stathmin 1 [Source:NCBI gene;Acc:396057]
24. RPL15 ENSGALG00000011290 403.43 3247.24 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
25. CIRBP ENSGALG00000030918 398.48 3207.39 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
26. RPL7 ENSGALG00000035252 397.39 3198.62 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
27. ENSGALG00000002696 ENSGALG00000002696 389.14 3132.21
28. RPL26 RPL26 389.14 3132.21
29. RPS4 RPS4 380.90 3065.89
30. RPL7A ENSGALG00000003197 378.15 3043.76 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
31. RPL23 ENSGALG00000001634 369.35 2972.92 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
32. RPL31 ENSGALG00000016775 364.41 2933.16 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
33. RPL18A 351.77 2831.42 ribosomal protein L18a
34. RPS27A ENSGALG00000036790 340.77 2742.88 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
35. ATP6V0C ENSGALG00000009229 329.23 2650.00 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
36. RAN ENSGALG00000002569 328.68 2645.57 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
37. MDK ENSGALG00000008367 324.83 2614.58 midkine [Source:NCBI gene;Acc:423196]
38. EEF1B2 ENSGALG00000008590 318.79 2565.96 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
39. LDHB ENSGALG00000035836 316.59 2548.25 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
40. RPL27A ENSGALG00000005948 308.89 2486.28 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
41. SLC25A6_1 ENSGALG00000016691 308.89 2486.28 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
42. RPS12 ENSGALG00000013990 293.50 2362.40 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
43. H3-IX H3-IX 290.76 2340.35
44. FKBP4 ENSGALG00000014331 281.41 2265.09 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
45. RPS3 ENSGALG00000017330 280.31 2256.23 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
46. RPS16 ENSGALG00000026490 277.57 2234.18 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
47. H2AFZ ENSGALG00000014023 274.82 2212.05 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
48. KPNA2 ENSGALG00000003584 274.27 2207.62 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
49. MT-ND2 MT-ND2 267.12 2150.07
50. HBZ ENSGALG00000023740 253.93 2043.90 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
51. RPS20 ENSGALG00000014432 252.83 2035.05 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
52. RPL14 ENSGALG00000043379 251.18 2021.77 ribosomal protein L14
53. EIF1 ENSGALG00000028517 250.08 2012.91 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
54. RPS24 ENSGALG00000004871 244.59 1968.72 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
55. RPL27 ENSGALG00000002837 244.04 1964.29 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
56. RPS11 ENSGALG00000017299 244.04 1964.29 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
57. RPS8 ENSGALG00000010124 239.64 1928.88 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
58. HMGN5 ENSGALG00000007131 238.54 1920.03 high mobility group nucleosome binding domain 5, transcript variant X1
59. HBG1 HBG1 237.99 1915.60
60. RPS10 ENSGALG00000002813 237.44 1911.17 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
61. RPLP1 ENSGALG00000030878 236.89 1906.74 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
62. RPL37 ENSGALG00000014833 236.34 1902.32 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
63. HBE 233.59 1880.18 hemoglobin subunit epsilon
64. RPL36 ENSGALG00000000474 232.50 1871.41 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
65. RPS14 ENSGALG00000004588 232.50 1871.41 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
66. ATP5G3 231.40 1862.55 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
67. CRHOA CRHOA 229.20 1844.85
68. SNRPE ENSGALG00000000137 228.10 1835.99 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
69. TCF12 ENSGALG00000004304 227.00 1827.14 transcription factor 12 [Source:NCBI gene;Acc:396334]
70. BTF3L4 ENSGALG00000010570 222.05 1787.30 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
71. RPL21 ENSGALG00000027035 222.05 1787.30 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
72. TXN ENSGALG00000015704 216.56 1743.11 thioredoxin [Source:NCBI gene;Acc:396437]
73. SNRPG ENSGALG00000028409 212.71 1712.12 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
74. RPL35A ENSGALG00000007611, ENSGALG00000041230 209.41 1685.56 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
75. ENSGALG00000028992 ENSGALG00000028992 203.36 1636.86
76. RPL32 ENSGALG00000027142 202.81 1632.43 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
77. ENSGALG00000018384 ENSGALG00000018384 201.72 1623.66
78. HNRNPDL ENSGALG00000023199 201.17 1619.23 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
79. RPS15A ENSGALG00000006771 201.17 1619.23 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
80. RPSA 197.32 1588.24 ribosomal protein SA
81. RPL38 ENSGALG00000001465 195.67 1574.96 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
82. HNRNPA3 ENSGALG00000009250 194.02 1561.68 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
83. IGF2BP3 ENSGALG00000010961 194.02 1561.68 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
84. MIF ENSGALG00000006326 190.72 1535.12 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
85. RPS29 ENSGALG00000012229 190.72 1535.12 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
86. TPT1 ENSGALG00000028872 187.43 1508.64 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
87. RPL10A ENSGALG00000002644 184.13 1482.08 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
88. HMGB2 ENSGALG00000010745 183.58 1477.65 high mobility group box 2 [Source:NCBI gene;Acc:396482]
89. YWHAZ ENSGALG00000031387 181.38 1459.94 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
90. RPL23A ENSGALG00000003966 180.83 1455.51 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
91. NDUFB9 ENSGALG00000042242 180.28 1451.09 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
92. ENSGALG00000018386 ENSGALG00000018386 178.08 1433.38
93. RPL3 ENSGALG00000012172 177.53 1428.95 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
94. LUM ENSGALG00000011271 176.43 1420.10 lumican [Source:NCBI gene;Acc:417891]
95. RPL13 ENSGALG00000006179 173.13 1393.54 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
96. EIF3F ENSGALG00000005326 170.94 1375.91 eukaryotic translation initiation factor 3 subunit F
97. ATP6V1G1 ENSGALG00000007190 170.39 1371.48 ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
98. NONO ENSGALG00000005507 167.09 1344.92 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
99. HMGN2 HMGN2 164.89 1327.21
100. PGK1 ENSGALG00000007936 163.79 1318.36 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA