Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s32.

Sample reads: 124,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 4811.56 38730.53
2. MT-CO3 MT-CO3 3700.01 29783.14
3. MT-ND5 MT-ND5 2795.21 22499.97
4. EEF1A EEF1A 1914.52 15410.88
5. MT-CYB MT-CYB 1697.65 13665.19
6. GAPDH ENSGALG00000014442 1680.55 13527.55 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
7. PPIA ENSGALG00000028600 1267.80 10205.12 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
8. gga-mir-3527 gga-mir-3527 1253.80 10092.43
9. MT-ND4 MT-ND4 1218.83 9810.94
10. NME2 ENSGALG00000002932 1008.17 8115.24 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
11. MT-ND1 MT-ND1 968.53 7796.16
12. gga-mir-3533 ENSGALG00000027736 957.65 7708.58 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
13. RPS23 ENSGALG00000015617 767.21 6175.64 ribosomal protein S23
14. MT-CO1 MT-CO1 751.66 6050.47
15. RPS6 ENSGALG00000015082 721.35 5806.49 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
16. MT-ND3 MT-ND3 623.40 5018.04
17. RPS7 ENSGALG00000016392 548.78 4417.39 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
18. EIF4G2 ENSGALG00000005587 516.14 4154.66 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
19. RPL5 ENSGALG00000005922 509.92 4104.59 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
20. ENO1 ENSGALG00000002377 499.81 4023.21 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
21. RPL15 ENSGALG00000011290 498.26 4010.73 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
22. RPL26 RPL26 495.93 3991.98
23. RPL8 ENSGALG00000016232 489.71 3941.91 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
24. ENSGALG00000002696 ENSGALG00000002696 466.39 3754.19
25. TMSB4X ENSGALG00000026383 439.96 3541.45 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
26. STMN1 ENSGALG00000001475 439.18 3535.17 stathmin 1 [Source:NCBI gene;Acc:396057]
27. RPL27A ENSGALG00000005948 422.86 3403.80 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
28. RPS27A ENSGALG00000036790 414.31 3334.98 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
29. RPL7A ENSGALG00000003197 408.09 3284.91 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
30. RPL23 ENSGALG00000001634 397.98 3203.53 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
31. CIRBP ENSGALG00000030918 380.88 3065.88 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
32. RPL18A 375.44 3022.10 ribosomal protein L18a
33. MDK ENSGALG00000008367 370.78 2984.58 midkine [Source:NCBI gene;Acc:423196]
34. ATP6V0C ENSGALG00000009229 370.00 2978.31 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
35. HBG1 HBG1 370.00 2978.31
36. RAN ENSGALG00000002569 366.11 2946.99 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
37. RPS16 ENSGALG00000026490 362.23 2915.76 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
38. RPS20 ENSGALG00000014432 360.67 2903.20 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
39. RPL31 ENSGALG00000016775 346.68 2790.59 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
40. RPS4 RPS4 338.13 2721.77
41. FKBP4 ENSGALG00000014331 314.81 2534.06 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
42. H2AFZ ENSGALG00000014023 310.92 2502.74 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
43. RPS10 ENSGALG00000002813 310.15 2496.54 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
44. HMGN5 ENSGALG00000007131 307.82 2477.79 high mobility group nucleosome binding domain 5, transcript variant X1
45. RPLP1 ENSGALG00000030878 306.26 2465.23 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
46. SNRPG ENSGALG00000028409 306.26 2465.23 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
47. ATP5G3 303.15 2440.20 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
48. RPL7 ENSGALG00000035252 298.49 2402.69 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
49. LDHB ENSGALG00000035836 293.05 2358.90 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
50. SLC25A6_1 ENSGALG00000016691 293.05 2358.90 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
51. EIF1 ENSGALG00000028517 292.27 2352.62 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
52. ENSGALG00000018384 ENSGALG00000018384 290.71 2340.06
53. HBE 290.71 2340.06 hemoglobin subunit epsilon
54. RPL35A ENSGALG00000007611, ENSGALG00000041230 282.94 2277.52 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
55. TCF12 ENSGALG00000004304 282.16 2271.24 transcription factor 12 [Source:NCBI gene;Acc:396334]
56. RPS12 ENSGALG00000013990 279.83 2252.48 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
57. EEF1B2 ENSGALG00000008590 275.17 2214.97 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
58. RPS29 ENSGALG00000012229 267.40 2152.43 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
59. H3-IX H3-IX 260.40 2096.08
60. ENSGALG00000028992 ENSGALG00000028992 258.84 2083.53
61. RPL14 ENSGALG00000043379 256.51 2064.77 ribosomal protein L14
62. RPS3 ENSGALG00000017330 254.18 2046.02 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
63. CRHOA CRHOA 252.63 2033.54
64. MT-ND2 MT-ND2 245.63 1977.19
65. RPS8 ENSGALG00000010124 245.63 1977.19 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
66. RPL38 ENSGALG00000001465 244.08 1964.72 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
67. KPNA2 ENSGALG00000003584 243.30 1958.44 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
68. RPL27 ENSGALG00000002837 243.30 1958.44 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
69. RPL36 ENSGALG00000000474 242.52 1952.16 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
70. RPS11 ENSGALG00000017299 241.74 1945.88 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
71. SNRPE ENSGALG00000000137 240.19 1933.40 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
72. RPSA 235.53 1895.89 ribosomal protein SA
73. MIF ENSGALG00000006326 226.98 1827.07 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
74. RPL21 ENSGALG00000027035 223.87 1802.04 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
75. TXN ENSGALG00000015704 223.87 1802.04 thioredoxin [Source:NCBI gene;Acc:396437]
76. RPL32 ENSGALG00000027142 222.31 1789.48 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
77. RPL3 ENSGALG00000012172 219.98 1770.72 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
78. BTF3L4 ENSGALG00000010570 217.65 1751.97 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
79. IGF2BP3 ENSGALG00000010961 212.98 1714.38 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
80. ENSGALG00000018386 ENSGALG00000018386 211.43 1701.90
81. NDUFB9 ENSGALG00000042242 208.32 1676.87 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
82. RPL23A ENSGALG00000003966 205.99 1658.11 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
83. ANP32B ENSGALG00000037483 200.55 1614.32 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
84. RPS15A ENSGALG00000006771 199.77 1608.04 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
85. HSPE1 ENSGALG00000009070 198.99 1601.77 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
86. RPL6 ENSGALG00000004818 198.99 1601.77 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
87. HNRNPDL ENSGALG00000023199 198.21 1595.49 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
88. RPL10A ENSGALG00000002644 198.21 1595.49 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
89. EIF5A2 ENSGALG00000009309 195.11 1570.53 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
90. RPL37 ENSGALG00000014833 195.11 1570.53 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
91. RPS24 ENSGALG00000004871 195.11 1570.53 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
92. RPLP0 ENSGALG00000023294 192.77 1551.70 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
93. YWHAZ ENSGALG00000031387 192.00 1545.50 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
94. RPL4 ENSGALG00000007711 191.22 1539.22 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
95. RPLP2 ENSGALG00000034811 190.44 1532.94 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
96. HBZ ENSGALG00000023740 187.33 1507.91 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
97. RPL13 ENSGALG00000006179 185.78 1495.43 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
98. CRABP-I ENSGALG00000003193 183.45 1476.68 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
99. HMGN2 HMGN2 183.45 1476.68
100. PGK1 ENSGALG00000007936 182.67 1470.40 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA