Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s31.

Sample reads: 124,242. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 3845.68 30954.93
2. MT-CO3 MT-CO3 3588.97 28888.60
3. MT-ND5 MT-ND5 2195.86 17675.08
4. MT-CYB MT-CYB 2097.19 16880.86
5. EEF1A EEF1A 1896.50 15265.45
6. GAPDH ENSGALG00000014442 1684.11 13555.86 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
7. MT-ND4 MT-ND4 1357.99 10930.83
8. gga-mir-3527 gga-mir-3527 1313.67 10574.09
9. PPIA ENSGALG00000028600 1267.68 10203.90 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
10. gga-mir-3533 ENSGALG00000027736 1253.46 10089.44 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. MT-ND1 MT-ND1 1036.05 8339.45
12. NME2 ENSGALG00000002932 864.63 6959.64 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
13. RPS23 ENSGALG00000015617 745.89 6003.87 ribosomal protein S23
14. MT-CO1 MT-CO1 737.53 5936.58
15. RPS6 ENSGALG00000015082 661.43 5324.03 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
16. ENO1 ENSGALG00000002377 627.99 5054.86 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
17. MT-ND3 MT-ND3 612.10 4926.96
18. RPL5 ENSGALG00000005922 596.21 4799.06 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
19. RPL15 ENSGALG00000011290 554.40 4462.52 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
20. RPS7 ENSGALG00000016392 544.37 4381.78 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
21. ENSGALG00000002696 ENSGALG00000002696 520.12 4186.59
22. EIF4G2 ENSGALG00000005587 516.77 4159.62 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
23. RPL18A 510.92 4112.53 ribosomal protein L18a
24. RPL8 ENSGALG00000016232 507.57 4085.57 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
25. TMSB4X ENSGALG00000026383 486.67 3917.34 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
26. STMN1 ENSGALG00000001475 436.50 3513.51 stathmin 1 [Source:NCBI gene;Acc:396057]
27. RPL23 ENSGALG00000001634 422.28 3399.05 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
28. RPL27A ENSGALG00000005948 409.74 3298.11 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
29. RPS27A ENSGALG00000036790 407.23 3277.91 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
30. RPL26 RPL26 401.38 3230.82
31. RPL7A ENSGALG00000003197 392.18 3156.76 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
32. CIRBP ENSGALG00000030918 382.14 3075.95 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
33. HBZ ENSGALG00000023740 380.47 3062.51 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
34. ATP6V0C ENSGALG00000009229 370.44 2981.77 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
35. RPS4 RPS4 363.75 2927.92
36. RPL7 ENSGALG00000035252 362.07 2914.40 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
37. LDHB ENSGALG00000035836 358.73 2887.52 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
38. RPS16 ENSGALG00000026490 352.04 2833.67 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
39. RPL31 ENSGALG00000016775 347.86 2800.02 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
40. RAN ENSGALG00000002569 347.02 2793.26 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
41. MDK ENSGALG00000008367 337.82 2719.21 midkine [Source:NCBI gene;Acc:423196]
42. RPS12 ENSGALG00000013990 323.61 2604.83 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
43. SLC25A6_1 ENSGALG00000016691 308.56 2483.68 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
44. RPS29 ENSGALG00000012229 304.38 2450.04 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
45. EEF1B2 ENSGALG00000008590 298.52 2402.87 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
46. RPL14 ENSGALG00000043379 291.83 2349.02 ribosomal protein L14
47. RPS10 ENSGALG00000002813 291.83 2349.02 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
48. RPL21 ENSGALG00000027035 286.82 2308.69 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
49. KPNA2 ENSGALG00000003584 285.98 2301.93 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
50. FKBP4 ENSGALG00000014331 285.14 2295.17 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
51. RPS3 ENSGALG00000017330 284.31 2288.49 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
52. ANP32B ENSGALG00000037483 283.47 2281.73 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
53. RPL27 ENSGALG00000002837 281.80 2268.29 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
54. MIF ENSGALG00000006326 280.13 2254.84 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
55. RPS20 ENSGALG00000014432 280.13 2254.84 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
56. ATP5G3 277.62 2234.64 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
57. HBG1 HBG1 277.62 2234.64
58. H2AFZ ENSGALG00000014023 275.11 2214.44 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
59. RPS8 ENSGALG00000010124 271.76 2187.47 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
60. SNRPG ENSGALG00000028409 265.91 2140.38 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
61. RPL35A ENSGALG00000007611, ENSGALG00000041230 265.08 2133.70 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
62. H3-IX H3-IX 264.24 2126.94
63. RPS14 ENSGALG00000004588 261.73 2106.74 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
64. EIF1 ENSGALG00000028517 259.22 2086.53 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
65. RPL36 ENSGALG00000000474 257.55 2073.09 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
66. RPLP1 ENSGALG00000030878 256.71 2066.33 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
67. HMGN5 ENSGALG00000007131 255.88 2059.65 high mobility group nucleosome binding domain 5, transcript variant X1
68. RPSA 243.33 1958.63 ribosomal protein SA
69. TXN ENSGALG00000015704 243.33 1958.63 thioredoxin [Source:NCBI gene;Acc:396437]
70. RPS24 ENSGALG00000004871 242.50 1951.95 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
71. EIF5A2 ENSGALG00000009309 231.63 1864.45 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
72. RPS11 ENSGALG00000017299 230.79 1857.69 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
73. RPS15 ENSGALG00000015195 230.79 1857.69 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
74. MT-ND2 MT-ND2 226.61 1824.05
75. RPL38 ENSGALG00000001465 225.77 1817.28 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
76. SNRPE ENSGALG00000000137 225.77 1817.28 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
77. HNRNPDL ENSGALG00000023199 223.27 1797.16 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
78. HBE 221.59 1783.64 hemoglobin subunit epsilon
79. IGF2BP3 ENSGALG00000010961 217.41 1749.99 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
80. RPL32 ENSGALG00000027142 208.21 1675.94 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
81. RPS15A ENSGALG00000006771 208.21 1675.94 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
82. NDUFB9 ENSGALG00000042242 205.71 1655.82 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
83. HMGN2 HMGN2 204.03 1642.29
84. RPL3 ENSGALG00000012172 202.36 1628.85 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
85. RPL23A ENSGALG00000003966 201.52 1622.09 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
86. RPL4 ENSGALG00000007711 201.52 1622.09 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
87. CRABP-I ENSGALG00000003193 198.18 1595.20 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
88. HNRNPA3 ENSGALG00000009250 196.51 1581.76 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
89. RPL37 ENSGALG00000014833 194.83 1568.24 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
90. RPL6 ENSGALG00000004818 194.83 1568.24 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
91. ENSGALG00000018384 ENSGALG00000018384 193.16 1554.80
92. ENSGALG00000028992 ENSGALG00000028992 193.16 1554.80
93. HMGB1 ENSGALG00000042875 193.16 1554.80 high mobility group box 1 [Source:NCBI gene;Acc:395724]
94. RPL10A ENSGALG00000002644 192.33 1548.12 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
95. ENSGALG00000028649 ENSGALG00000028649 191.49 1541.36
96. CRHOA CRHOA 185.64 1494.27
97. NONO ENSGALG00000005507 185.64 1494.27 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
98. TPT1 ENSGALG00000028872 183.13 1474.06 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
99. TCF12 ENSGALG00000004304 178.11 1433.66 transcription factor 12 [Source:NCBI gene;Acc:396334]
100. ENSGALG00000018386 ENSGALG00000018386 177.27 1426.89
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA