Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s30.

Sample reads: 124,243. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4155.83 33450.18
2. MT-ATP6 MT-ATP6 4088.83 32910.90
3. MT-ND5 MT-ND5 3433.86 27639.06
4. MT-CYB MT-CYB 2093.41 16849.81
5. EEF1A EEF1A 1953.42 15723.03
6. GAPDH ENSGALG00000014442 1722.93 13867.83 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
7. MT-ND4 MT-ND4 1442.94 11614.19
8. gga-mir-3527 gga-mir-3527 1432.44 11529.68
9. PPIA ENSGALG00000028600 1329.95 10704.74 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
10. gga-mir-3533 ENSGALG00000027736 1261.45 10153.38 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. MT-ND1 MT-ND1 1172.45 9437.02
12. NME2 ENSGALG00000002932 956.46 7698.53 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
13. MT-CO1 MT-CO1 831.97 6696.51
14. RPS23 ENSGALG00000015617 823.97 6632.12 ribosomal protein S23
15. MT-ND3 MT-ND3 811.97 6535.53
16. RPS6 ENSGALG00000015082 637.97 5135.01 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
17. RPL5 ENSGALG00000005922 617.47 4970.00 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
18. EIF4G2 ENSGALG00000005587 536.98 4322.14 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
19. RPL8 ENSGALG00000016232 536.48 4318.12 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
20. ENO1 ENSGALG00000002377 530.48 4269.82 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
21. RPL15 ENSGALG00000011290 518.98 4177.26 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
22. RPS7 ENSGALG00000016392 506.48 4076.65 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
23. TMSB4X ENSGALG00000026383 490.98 3951.89 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
24. STMN1 ENSGALG00000001475 457.98 3686.27 stathmin 1 [Source:NCBI gene;Acc:396057]
25. ENSGALG00000002696 ENSGALG00000002696 420.48 3384.43
26. RPL18A 402.98 3243.58 ribosomal protein L18a
27. RPL27A ENSGALG00000005948 402.98 3243.58 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
28. CIRBP ENSGALG00000030918 395.48 3183.21 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
29. RPL26 RPL26 390.48 3142.96
30. RPL7A ENSGALG00000003197 390.48 3142.96 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
31. RPL31 ENSGALG00000016775 377.48 3038.33 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
32. MDK ENSGALG00000008367 376.98 3034.30 midkine [Source:NCBI gene;Acc:423196]
33. LDHB ENSGALG00000035836 369.98 2977.96 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
34. RPL7 ENSGALG00000035252 369.48 2973.94 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
35. ATP6V0C ENSGALG00000009229 357.99 2881.45 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
36. RAN ENSGALG00000002569 356.99 2873.40 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
37. RPL23 ENSGALG00000001634 353.49 2845.23 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
38. RPS4 RPS4 346.99 2792.91
39. RPS27A ENSGALG00000036790 345.99 2784.87 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
40. RPS12 ENSGALG00000013990 343.99 2768.77 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
41. RPS3 ENSGALG00000017330 319.99 2575.59 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
42. RPS16 ENSGALG00000026490 314.99 2535.35 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
43. FKBP4 ENSGALG00000014331 304.99 2454.86 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
44. RPS10 ENSGALG00000002813 304.49 2450.83 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
45. ATP5G3 302.99 2438.76 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
46. RPL14 ENSGALG00000043379 300.99 2422.66 ribosomal protein L14
47. RPS11 ENSGALG00000017299 300.99 2422.66 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
48. MIF ENSGALG00000006326 297.99 2398.51 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
49. EIF1 ENSGALG00000028517 293.49 2362.29 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
50. SLC25A6_1 ENSGALG00000016691 292.49 2354.25 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
51. RPS8 ENSGALG00000010124 290.99 2342.17 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
52. RPS29 ENSGALG00000012229 283.99 2285.83 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
53. H2AFZ ENSGALG00000014023 282.49 2273.76 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
54. RPLP1 ENSGALG00000030878 278.49 2241.56 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
55. RPS20 ENSGALG00000014432 275.49 2217.41 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
56. EEF1B2 ENSGALG00000008590 268.49 2161.07 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
57. SNRPG ENSGALG00000028409 268.49 2161.07 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
58. RPL27 ENSGALG00000002837 267.49 2153.02 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
59. H3-IX H3-IX 260.49 2096.68
60. RPS14 ENSGALG00000004588 259.49 2088.63 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
61. RPL38 ENSGALG00000001465 252.49 2032.29 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
62. RPL21 ENSGALG00000027035 250.99 2020.21 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
63. KPNA2 ENSGALG00000003584 248.99 2004.11 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
64. MT-ND2 MT-ND2 248.49 2000.09
65. RPL4 ENSGALG00000007711 248.49 2000.09 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
66. RPS24 ENSGALG00000004871 247.99 1996.07 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
67. RPL36 ENSGALG00000000474 247.49 1992.04 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
68. NDUFB9 ENSGALG00000042242 240.49 1935.70 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
69. SNRPE ENSGALG00000000137 240.49 1935.70 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
70. RPL37 ENSGALG00000014833 236.49 1903.50 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
71. CRHOA CRHOA 235.99 1899.48
72. RPL32 ENSGALG00000027142 230.99 1859.23 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
73. RPS15 ENSGALG00000015195 230.49 1855.21 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
74. CRABP-I ENSGALG00000003193 228.49 1839.11 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
75. TCF12 ENSGALG00000004304 228.49 1839.11 transcription factor 12 [Source:NCBI gene;Acc:396334]
76. HMGN5 ENSGALG00000007131 227.49 1831.06 high mobility group nucleosome binding domain 5, transcript variant X1
77. RPL3 ENSGALG00000012172 223.99 1802.89 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
78. ENSGALG00000028992 ENSGALG00000028992 219.99 1770.69
79. TXN ENSGALG00000015704 219.49 1766.67 thioredoxin [Source:NCBI gene;Acc:396437]
80. HBG1 HBG1 214.49 1726.43
81. RPL35A ENSGALG00000007611, ENSGALG00000041230 214.49 1726.43 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
82. RPS15A ENSGALG00000006771 214.49 1726.43 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
83. HMGN2 HMGN2 208.99 1682.16
84. ANP32B ENSGALG00000037483 203.49 1637.89 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
85. HNRNPA3 ENSGALG00000009250 202.49 1629.84 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
86. RPSA 201.99 1625.81 ribosomal protein SA
87. RPL13 ENSGALG00000006179 200.99 1617.76 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
88. EIF5A2 ENSGALG00000009309 200.49 1613.74 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
89. RPL10A ENSGALG00000002644 200.49 1613.74 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
90. HNRNPDL ENSGALG00000023199 198.99 1601.67 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
91. IGF2BP3 ENSGALG00000010961 191.49 1541.30 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
92. RPL23A ENSGALG00000003966 190.99 1537.27 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
93. PGK1 ENSGALG00000007936 189.99 1529.23 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
94. RPL6 ENSGALG00000004818 189.99 1529.23 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
95. NONO ENSGALG00000005507 188.99 1521.18 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
96. ENSGALG00000018384 ENSGALG00000018384 187.49 1509.10
97. BTF3L4 ENSGALG00000010570 182.99 1472.88 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
98. RPS21 ENSGALG00000005338 182.49 1468.86 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
99. HSPE1 ENSGALG00000009070 181.49 1460.81 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
100. EIF3F ENSGALG00000005326 177.49 1428.61 eukaryotic translation initiation factor 3 subunit F
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA