Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s23.

Sample reads: 124,245. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3882.82 31252.21
2. GAPDH ENSGALG00000014442 2629.60 21165.24 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
3. MT-ATP6 MT-ATP6 2398.66 19306.44
4. EEF1A EEF1A 2306.29 18562.97
5. MT-ND5 MT-ND5 2081.51 16753.75
6. MT-CYB MT-CYB 1884.44 15167.56
7. MT-ND4 MT-ND4 1478.00 11896.19
8. MT-ND1 MT-ND1 1237.82 9963.02
9. gga-mir-3527 gga-mir-3527 1231.66 9913.44
10. MT-ND3 MT-ND3 1016.12 8178.59
11. ENO1 ENSGALG00000002377 929.91 7484.70 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
12. NME2 ENSGALG00000002932 892.96 7187.30 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
13. RPS23 ENSGALG00000015617 856.01 6889.89 ribosomal protein S23
14. MT-CO1 MT-CO1 837.53 6741.15
15. PPIA ENSGALG00000028600 788.26 6344.58 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
16. gga-mir-3533 ENSGALG00000027736 785.19 6319.87 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
17. RPS6 ENSGALG00000015082 732.84 5898.51 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
18. RPL8 ENSGALG00000016232 698.97 5625.90 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
19. TMSB4X ENSGALG00000026383 692.81 5576.32 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
20. ENSGALG00000002696 ENSGALG00000002696 609.67 4907.14
21. EIF4G2 ENSGALG00000005587 600.44 4832.85 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
22. RPL26 RPL26 597.36 4808.06
23. RPS7 ENSGALG00000016392 548.09 4411.49 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
24. STMN1 ENSGALG00000001475 526.54 4238.04 stathmin 1 [Source:NCBI gene;Acc:396057]
25. RPL7A ENSGALG00000003197 520.38 4188.46 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
26. RPS4 RPS4 508.06 4089.30
27. LDHB ENSGALG00000035836 504.98 4064.51 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
28. RPL5 ENSGALG00000005922 501.90 4039.71 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
29. RPL23 ENSGALG00000001634 477.27 3841.47 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
30. RPL18A 452.64 3643.23 ribosomal protein L18a
31. RPL31 ENSGALG00000016775 421.84 3395.32 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
32. RPL15 ENSGALG00000011290 418.77 3370.61 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
33. RPL27A ENSGALG00000005948 409.53 3296.24 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
34. CIRBP ENSGALG00000030918 394.13 3172.29 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
35. RPL7 ENSGALG00000035252 387.97 3122.71 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
36. RPS16 ENSGALG00000026490 381.82 3073.21 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
37. RAN ENSGALG00000002569 372.58 2998.84 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
38. H2AFZ ENSGALG00000014023 366.42 2949.26 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
39. RPS3 ENSGALG00000017330 363.34 2924.47 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
40. FKBP4 ENSGALG00000014331 357.18 2874.89 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
41. RPS10 ENSGALG00000002813 357.18 2874.89 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
42. CRABP-I ENSGALG00000003193 354.10 2850.10 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
43. RPS11 ENSGALG00000017299 354.10 2850.10 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
44. RPL27 ENSGALG00000002837 347.94 2800.51 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
45. RPS12 ENSGALG00000013990 347.94 2800.51 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
46. RPS14 ENSGALG00000004588 347.94 2800.51 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
47. RPL37 ENSGALG00000014833 338.71 2726.22 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
48. RPLP1 ENSGALG00000030878 338.71 2726.22 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
49. SLC25A6_1 ENSGALG00000016691 335.63 2701.43 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
50. KPNA2 ENSGALG00000003584 329.47 2651.85 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
51. RPL36 ENSGALG00000000474 329.47 2651.85 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
52. SNRPE ENSGALG00000000137 329.47 2651.85 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
53. HMGN5 ENSGALG00000007131 320.23 2577.48 high mobility group nucleosome binding domain 5, transcript variant X1
54. ENSGALG00000018386 ENSGALG00000018386 317.15 2552.69
55. RPL13 ENSGALG00000006179 317.15 2552.69 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
56. RPL35A ENSGALG00000007611, ENSGALG00000041230 310.99 2503.11 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
57. RPS27A ENSGALG00000036790 310.99 2503.11 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
58. EEF1B2 ENSGALG00000008590 301.76 2428.82 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
59. RPL14 ENSGALG00000043379 298.68 2404.03 ribosomal protein L14
60. RPS20 ENSGALG00000014432 292.52 2354.45 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
61. SNRPG ENSGALG00000028409 286.36 2304.87 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
62. RPS15A ENSGALG00000006771 283.28 2280.08 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
63. ENSGALG00000018384 ENSGALG00000018384 274.04 2205.71
64. MIF ENSGALG00000006326 267.89 2156.20 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
65. MT-ND2 MT-ND2 264.81 2131.41
66. H3-IX H3-IX 261.73 2106.62
67. PGK1 ENSGALG00000007936 261.73 2106.62 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
68. RPS24 ENSGALG00000004871 258.65 2081.83 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
69. MDK ENSGALG00000008367 255.57 2057.04 midkine [Source:NCBI gene;Acc:423196]
70. EIF5A2 ENSGALG00000009309 252.49 2032.25 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
71. RPL38 ENSGALG00000001465 252.49 2032.25 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
72. RPS15 ENSGALG00000015195 249.41 2007.46 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
73. RPS29 ENSGALG00000012229 249.41 2007.46 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
74. RPL23A ENSGALG00000003966 246.33 1982.67 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
75. ATP6V0C ENSGALG00000009229 243.25 1957.88 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
76. HSPE1 ENSGALG00000009070 243.25 1957.88 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
77. NDUFB9 ENSGALG00000042242 243.25 1957.88 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
78. RPSA 243.25 1957.88 ribosomal protein SA
79. PRTG ENSGALG00000037336 237.10 1908.38 protogenin [Source:NCBI gene;Acc:415407]
80. ENSGALG00000028992 ENSGALG00000028992 230.94 1858.80
81. IGF2BP3 ENSGALG00000010961 227.86 1834.01 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
82. ATP5G3 221.70 1784.43 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
83. RPL6 ENSGALG00000004818 221.70 1784.43 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
84. RPS8 ENSGALG00000010124 221.70 1784.43 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
85. CRHOA CRHOA 215.54 1734.85
86. HSP90AA1 ENSGALG00000033212 215.54 1734.85 heat shock protein 90 alpha family class A member 1 [Source:NCBI gene;Acc:423463]
87. ANP32B ENSGALG00000037483 209.38 1685.27 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
88. RPL32 ENSGALG00000027142 209.38 1685.27 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
89. HMGB1 ENSGALG00000042875 200.15 1610.98 high mobility group box 1 [Source:NCBI gene;Acc:395724]
90. RPL21 ENSGALG00000027035 200.15 1610.98 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
91. RPL29 ENSGALG00000026978 200.15 1610.98 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
92. RPLP2 ENSGALG00000034811 200.15 1610.98 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
93. ATP6V1G1 ENSGALG00000007190 197.07 1586.19 ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
94. HSPA8 ENSGALG00000006512 197.07 1586.19 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
95. BTF3L4 ENSGALG00000010570 190.91 1536.60 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
96. CCT6 CCT6 190.91 1536.60
97. EIF1 ENSGALG00000028517 187.83 1511.81 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
98. PDIA6 ENSGALG00000016447 187.83 1511.81 protein disulfide isomerase family A member 6 [Source:HGNC Symbol;Acc:HGNC:30168]
99. YWHAZ ENSGALG00000031387 184.75 1487.02 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
100. HNRNPDL ENSGALG00000023199 178.59 1437.44 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA