Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s22.

Sample reads: 124,243. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4181.83 33658.40
2. MT-ATP6 MT-ATP6 2635.70 21214.02
3. EEF1A EEF1A 2386.65 19209.49
4. GAPDH ENSGALG00000014442 2355.52 18958.93 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
5. MT-CYB MT-CYB 2282.89 18374.35
6. MT-ND4 MT-ND4 1971.58 15868.71
7. MT-ND5 MT-ND5 1701.79 13697.24
8. MT-ND1 MT-ND1 1400.86 11275.14
9. gga-mir-3527 gga-mir-3527 1380.11 11108.13
10. MT-ND3 MT-ND3 1359.36 10941.11
11. MT-CO1 MT-CO1 1016.92 8184.91
12. RPS23 ENSGALG00000015617 1006.55 8101.44 ribosomal protein S23
13. ENO1 ENSGALG00000002377 913.15 7349.69 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
14. RPL8 ENSGALG00000016232 902.78 7266.23 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
15. PPIA ENSGALG00000028600 850.89 6848.58 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
16. RPS6 ENSGALG00000015082 809.39 6514.56 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
17. gga-mir-3533 ENSGALG00000027736 747.13 6013.44 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
18. NME2 ENSGALG00000002932 664.11 5345.24 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
19. TMSB4X ENSGALG00000026383 664.11 5345.24 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
20. RPL26 RPL26 643.36 5178.23
21. RPL18A 622.61 5011.22 ribosomal protein L18a
22. RPL7 ENSGALG00000035252 612.23 4927.67 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
23. RPL23 ENSGALG00000001634 601.85 4844.13 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
24. RPL5 ENSGALG00000005922 601.85 4844.13 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
25. ENSGALG00000002696 ENSGALG00000002696 570.72 4593.57
26. RPS10 ENSGALG00000002813 549.97 4426.56 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
27. RPL15 ENSGALG00000011290 539.59 4343.01 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
28. STMN1 ENSGALG00000001475 518.84 4176.00 stathmin 1 [Source:NCBI gene;Acc:396057]
29. RPL27 ENSGALG00000002837 508.46 4092.45 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
30. RPS7 ENSGALG00000016392 498.08 4008.91 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
31. RPL37 ENSGALG00000014833 477.33 3841.90 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
32. RPS4 RPS4 477.33 3841.90
33. CIRBP ENSGALG00000030918 466.95 3758.35 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
34. RPL7A ENSGALG00000003197 446.20 3591.34 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
35. RPS3 ENSGALG00000017330 446.20 3591.34 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
36. SNRPG ENSGALG00000028409 446.20 3591.34 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
37. RPL27A ENSGALG00000005948 435.82 3507.80 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
38. RPS12 ENSGALG00000013990 435.82 3507.80 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
39. CRABP-I ENSGALG00000003193 425.45 3424.33 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
40. ENSGALG00000028992 ENSGALG00000028992 425.45 3424.33
41. LDHB ENSGALG00000035836 425.45 3424.33 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
42. EIF4G2 ENSGALG00000005587 404.69 3257.24 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
43. ENSGALG00000018386 ENSGALG00000018386 404.69 3257.24
44. RPS29 ENSGALG00000012229 404.69 3257.24 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
45. ENSGALG00000018384 ENSGALG00000018384 394.32 3173.77
46. RPS24 ENSGALG00000004871 394.32 3173.77 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
47. SLC25A6_1 ENSGALG00000016691 383.94 3090.23 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
48. MT-ND2 MT-ND2 373.56 3006.68
49. RPS11 ENSGALG00000017299 373.56 3006.68 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
50. MIF ENSGALG00000006326 363.19 2923.22 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
51. RPL31 ENSGALG00000016775 363.19 2923.22 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
52. RPL38 ENSGALG00000001465 363.19 2923.22 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
53. RPS14 ENSGALG00000004588 363.19 2923.22 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
54. RPS15A ENSGALG00000006771 363.19 2923.22 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
55. KPNA2 ENSGALG00000003584 342.43 2756.12 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
56. RAN ENSGALG00000002569 332.06 2672.66 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
57. RPL14 ENSGALG00000043379 332.06 2672.66 ribosomal protein L14
58. RPL36 ENSGALG00000000474 332.06 2672.66 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
59. RPS20 ENSGALG00000014432 332.06 2672.66 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
60. RPSA 332.06 2672.66 ribosomal protein SA
61. RPL10A ENSGALG00000002644 321.68 2589.11 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
62. HMGN5 ENSGALG00000007131 311.30 2505.57 high mobility group nucleosome binding domain 5, transcript variant X1
63. HSPA8 ENSGALG00000006512 311.30 2505.57 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
64. PGK1 ENSGALG00000007936 300.93 2422.10 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
65. RPS27A ENSGALG00000036790 300.93 2422.10 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
66. RPL35A ENSGALG00000007611, ENSGALG00000041230 280.17 2255.01 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
67. RPS16 ENSGALG00000026490 280.17 2255.01 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
68. RPS8 ENSGALG00000010124 280.17 2255.01 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
69. EIF1 ENSGALG00000028517 269.80 2171.55 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
70. H2AFZ ENSGALG00000014023 269.80 2171.55 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
71. RPL13 ENSGALG00000006179 269.80 2171.55 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
72. RPLP1 ENSGALG00000030878 269.80 2171.55 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
73. RPS15 ENSGALG00000015195 269.80 2171.55 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
74. TXN ENSGALG00000015704 269.80 2171.55 thioredoxin [Source:NCBI gene;Acc:396437]
75. HMGB1 ENSGALG00000042875 259.42 2088.00 high mobility group box 1 [Source:NCBI gene;Acc:395724]
76. RPL23A ENSGALG00000003966 259.42 2088.00 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
77. ERH ENSGALG00000017384 249.04 2004.45 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
78. FKBP4 ENSGALG00000014331 249.04 2004.45 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
79. HSP90AA1 ENSGALG00000033212 249.04 2004.45 heat shock protein 90 alpha family class A member 1 [Source:NCBI gene;Acc:423463]
80. HSPE1 ENSGALG00000009070 249.04 2004.45 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
81. H3-IX H3-IX 238.67 1920.99
82. MDK ENSGALG00000008367 238.67 1920.99 midkine [Source:NCBI gene;Acc:423196]
83. RPL21 ENSGALG00000027035 238.67 1920.99 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
84. RPL6 ENSGALG00000004818 238.67 1920.99 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
85. SNRPE ENSGALG00000000137 238.67 1920.99 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
86. BTF3L4 ENSGALG00000010570 228.29 1837.44 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
87. COX7C ENSGALG00000027963 217.91 1753.90 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
88. CRHOA CRHOA 217.91 1753.90
89. RPLP2 ENSGALG00000034811 217.91 1753.90 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
90. RPS17 ENSGALG00000002157 217.91 1753.90 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
91. SUB1 ENSGALG00000003248 217.91 1753.90 SUB1 homolog, transcriptional regulator [Source:NCBI gene;Acc:427425]
92. YWHAZ ENSGALG00000031387 217.91 1753.90 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
93. EIF5A2 ENSGALG00000009309 207.54 1670.43 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
94. IGF2BP3 ENSGALG00000010961 207.54 1670.43 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
95. RPL29 ENSGALG00000026978 207.54 1670.43 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
96. RPL3 ENSGALG00000012172 207.54 1670.43 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
97. EEF1B2 ENSGALG00000008590 197.16 1586.89 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
98. HMGB2 ENSGALG00000010745 197.16 1586.89 high mobility group box 2 [Source:NCBI gene;Acc:396482]
99. NDUFB9 ENSGALG00000042242 197.16 1586.89 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
100. RPL32 ENSGALG00000027142 197.16 1586.89 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA