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Experiment Chicken_E3_posterior_slice_2, section s20.

Sample reads: 124,243. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5992.63 48233.12
2. MT-ATP6 MT-ATP6 5284.84 42536.30
3. MT-ND4 MT-ND4 4058.00 32661.78
4. MT-ND5 MT-ND5 3774.89 30383.11
5. MT-CYB MT-CYB 3397.40 27344.79
6. GAPDH ENSGALG00000014442 2217.75 17850.09 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
7. gga-mir-3527 gga-mir-3527 2217.75 17850.09
8. EEF1A EEF1A 1934.63 15571.33
9. MT-ND1 MT-ND1 1793.07 14431.95
10. RPS23 ENSGALG00000015617 1274.02 10254.25 ribosomal protein S23
11. MT-ND3 MT-ND3 1038.09 8355.32
12. MT-CO1 MT-CO1 990.91 7975.58
13. gga-mir-3533 ENSGALG00000027736 849.35 6836.20 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
14. RPL5 ENSGALG00000005922 802.16 6456.38 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
15. PPIA ENSGALG00000028600 754.98 6076.64 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
16. STMN1 ENSGALG00000001475 754.98 6076.64 stathmin 1 [Source:NCBI gene;Acc:396057]
17. EIF4G2 ENSGALG00000005587 707.79 5696.82 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
18. ENO1 ENSGALG00000002377 707.79 5696.82 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
19. ENSGALG00000002696 ENSGALG00000002696 707.79 5696.82
20. RPL18A 707.79 5696.82 ribosomal protein L18a
21. RPS6 ENSGALG00000015082 707.79 5696.82 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
22. ENSGALG00000018384 ENSGALG00000018384 660.60 5317.00
23. ENSGALG00000018386 ENSGALG00000018386 660.60 5317.00
24. RPL14 ENSGALG00000043379 660.60 5317.00 ribosomal protein L14
25. RPL26 RPL26 660.60 5317.00
26. CIRBP ENSGALG00000030918 613.42 4937.26 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
27. MT-ND2 MT-ND2 613.42 4937.26
28. RPL7A ENSGALG00000003197 613.42 4937.26 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
29. EEF1B2 ENSGALG00000008590 566.23 4557.44 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
30. CRABP-I ENSGALG00000003193 519.05 4177.70 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
31. MDK ENSGALG00000008367 519.05 4177.70 midkine [Source:NCBI gene;Acc:423196]
32. NME2 ENSGALG00000002932 519.05 4177.70 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
33. RPL31 ENSGALG00000016775 519.05 4177.70 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
34. EEF1D 424.67 3418.06 eukaryotic translation elongation factor 1 delta, transcript variant X13
35. NDUFB9 ENSGALG00000042242 424.67 3418.06 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
36. RPL21 ENSGALG00000027035 424.67 3418.06 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
37. RPL8 ENSGALG00000016232 424.67 3418.06 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
38. RPLP1 ENSGALG00000030878 424.67 3418.06 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
39. RPS10 ENSGALG00000002813 424.67 3418.06 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
40. RPS7 ENSGALG00000016392 424.67 3418.06 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
41. TMSB4X ENSGALG00000026383 424.67 3418.06 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
42. LDHB ENSGALG00000035836 377.49 3038.32 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
43. RPL15 ENSGALG00000011290 377.49 3038.32 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
44. RPL23 ENSGALG00000001634 377.49 3038.32 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
45. RPL27A ENSGALG00000005948 377.49 3038.32 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
46. SLC25A6_1 ENSGALG00000016691 377.49 3038.32 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
47. H2AFZ ENSGALG00000014023 330.30 2658.50 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
48. HSPA8 ENSGALG00000006512 330.30 2658.50 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
49. HSPE1 ENSGALG00000009070 330.30 2658.50 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
50. NDUFA5 ENSGALG00000008821 330.30 2658.50 NADH:ubiquinone oxidoreductase subunit A5 [Source:NCBI gene;Acc:417753]
51. PDIA6 ENSGALG00000016447 330.30 2658.50 protein disulfide isomerase family A member 6 [Source:HGNC Symbol;Acc:HGNC:30168]
52. RPL10A ENSGALG00000002644 330.30 2658.50 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
53. RPS12 ENSGALG00000013990 330.30 2658.50 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
54. RPS14 ENSGALG00000004588 330.30 2658.50 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
55. RPS16 ENSGALG00000026490 330.30 2658.50 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
56. RPS20 ENSGALG00000014432 330.30 2658.50 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
57. RPS8 ENSGALG00000010124 330.30 2658.50 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
58. RPSA 330.30 2658.50 ribosomal protein SA
59. EIF1 ENSGALG00000028517 283.12 2278.76 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
60. HSP90AB1 ENSGALG00000010175 283.12 2278.76 heat shock protein 90 alpha family class B member 1 [Source:NCBI gene;Acc:396188]
61. IGF2BP3 ENSGALG00000010961 283.12 2278.76 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
62. MIF ENSGALG00000006326 283.12 2278.76 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
63. RPL13 ENSGALG00000006179 283.12 2278.76 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
64. RPL32 ENSGALG00000027142 283.12 2278.76 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
65. RPS11 ENSGALG00000017299 283.12 2278.76 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
66. RPS15 ENSGALG00000015195 283.12 2278.76 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
67. RPS4 RPS4 283.12 2278.76
68. BTF3L4 ENSGALG00000010570 235.93 1898.94 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
69. CCNB2 ENSGALG00000004161 235.93 1898.94 cyclin B2 [Source:NCBI gene;Acc:415400]
70. CCT6 CCT6 235.93 1898.94
71. DYNLRB1 ENSGALG00000034509 235.93 1898.94 dynein light chain roadblock-type 1
72. HMGN2 HMGN2 235.93 1898.94
73. HSP90B1 ENSGALG00000033789 235.93 1898.94 heat shock protein 90 beta family member 1 [Source:NCBI gene;Acc:374163]
74. IPO7 ENSGALG00000005807 235.93 1898.94 importin 7 [Source:HGNC Symbol;Acc:HGNC:9852]
75. MT-ND6 MT-ND6 235.93 1898.94
76. RAN ENSGALG00000002569 235.93 1898.94 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
77. RPL12 ENSGALG00000008806 235.93 1898.94 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
78. RPL27 ENSGALG00000002837 235.93 1898.94 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
79. RPL7 ENSGALG00000035252 235.93 1898.94 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
80. SUB1 ENSGALG00000003248 235.93 1898.94 SUB1 homolog, transcriptional regulator [Source:NCBI gene;Acc:427425]
81. TPT1 ENSGALG00000028872 235.93 1898.94 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
82. gga-mir-3526 ENSGALG00000029121 235.93 1898.94 gga-mir-3526 [Source:miRBase;Acc:MI0015377]
83. ANP32B ENSGALG00000037483 188.74 1519.12 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
84. ATP6V0C ENSGALG00000009229 188.74 1519.12 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
85. BUB3 ENSGALG00000009681 188.74 1519.12 BUB3, mitotic checkpoint protein [Source:NCBI gene;Acc:423949]
86. C13H5ORF15 C13H5ORF15 188.74 1519.12
87. C5ORF13 C5ORF13 188.74 1519.12
88. CRHOA CRHOA 188.74 1519.12
89. DDX42 ENSGALG00000000581 188.74 1519.12 DEAD-box helicase 42 [Source:NCBI gene;Acc:419959]
90. EIF3M ENSGALG00000012109 188.74 1519.12 eukaryotic translation initiation factor 3 subunit M [Source:NCBI gene;Acc:421602]
91. ENSGALG00000028992 ENSGALG00000028992 188.74 1519.12
92. ERH ENSGALG00000017384 188.74 1519.12 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
93. FKBP4 ENSGALG00000014331 188.74 1519.12 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
94. GCSH ENSGALG00000032679 188.74 1519.12 glycine cleavage system protein H [Source:NCBI gene;Acc:415803]
95. GNB1 ENSGALG00000001334 188.74 1519.12 G protein subunit beta 1 [Source:NCBI gene;Acc:419402]
96. HMGB2 ENSGALG00000010745 188.74 1519.12 high mobility group box 2 [Source:NCBI gene;Acc:396482]
97. HNRNPA3 ENSGALG00000009250 188.74 1519.12 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
98. LTA4H ENSGALG00000033709 188.74 1519.12 leukotriene A4 hydrolase [Source:NCBI gene;Acc:417918]
99. MRPL42 ENSGALG00000011293 188.74 1519.12 mitochondrial ribosomal protein L42 [Source:HGNC Symbol;Acc:HGNC:14493]
100. NDUFA11 ENSGALG00000021692 188.74 1519.12 NADH:ubiquinone oxidoreductase subunit A11
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA