Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_1, section s5.

Sample reads: 124,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 8157.64 65660.44
2. RPLP1 ENSGALG00000030878 1508.80 12144.26 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
3. MT-ATP6 MT-ATP6 1440.53 11594.75
4. RPS10 ENSGALG00000002813 1423.67 11459.05 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
5. EEF1A EEF1A 1413.55 11377.59
6. TMSB4X ENSGALG00000026383 1398.38 11255.49 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
7. RPS3A ENSGALG00000010077 1192.71 9600.06 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
8. RPS8 ENSGALG00000010124 1006.43 8100.70 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
9. RPS12 ENSGALG00000013990 927.20 7462.99 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
10. MT-CYB MT-CYB 908.65 7313.68
11. RPS29 ENSGALG00000012229 869.04 6994.86 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
12. RPL38 ENSGALG00000001465 770.42 6201.07 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
13. RPL35A ENSGALG00000007611, ENSGALG00000041230 766.20 6167.11 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
14. RPL27 ENSGALG00000002837 746.81 6011.04 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
15. MT-CO1 MT-CO1 745.97 6004.28
16. RPL8 ENSGALG00000016232 728.27 5861.81 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
17. RPL36AL ENSGALG00000004952 721.53 5807.56 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
18. RPL26 RPL26 695.40 5597.24
19. RPL14 ENSGALG00000043379 677.70 5454.77 ribosomal protein L14
20. GAPDH ENSGALG00000014442 667.58 5373.32 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
21. RPL23 ENSGALG00000001634 667.58 5373.32 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
22. MT-ND6 MT-ND6 659.15 5305.47
23. RPL6 ENSGALG00000004818 633.02 5095.15 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
24. RPS21 ENSGALG00000005338 622.91 5013.77 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
25. RPL23A ENSGALG00000003966 620.38 4993.41 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
26. RPL18A 613.64 4939.16 ribosomal protein L18a
27. RPS23 ENSGALG00000015617 571.49 4599.89 ribosomal protein S23
28. RAN ENSGALG00000002569 569.80 4586.29 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
29. RPL7A ENSGALG00000003197 564.75 4545.64 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
30. RPL19 ENSGALG00000001658 561.38 4518.52 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
31. RPS15A ENSGALG00000006771 552.95 4450.67 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
32. RPL27A ENSGALG00000005948 547.89 4409.94 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
33. MT-ND4 MT-ND4 545.36 4389.58
34. RPL13 ENSGALG00000006179 528.50 4253.87 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
35. RPS7 ENSGALG00000016392 523.44 4213.14 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
36. RPS14 ENSGALG00000004588 515.86 4152.13 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
37. RPLP2 ENSGALG00000034811 514.17 4138.53 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
38. RPL21 ENSGALG00000027035 506.59 4077.52 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
39. gga-mir-3527 gga-mir-3527 489.73 3941.81
40. RPL29 ENSGALG00000026978 486.36 3914.69 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
41. MT-ND5 MT-ND5 480.46 3867.20
42. RPS6 ENSGALG00000015082 466.97 3758.62 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
43. RPS15 ENSGALG00000015195 456.01 3670.40 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
44. MT-ND3 MT-ND3 450.95 3629.67
45. RPS16 ENSGALG00000026490 447.58 3602.55 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
46. RPS4 RPS4 436.63 3514.41
47. RPS24 ENSGALG00000004871 435.78 3507.57 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
48. RPL32 ENSGALG00000027142 431.57 3473.69 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
49. RPL35 ENSGALG00000035677 429.04 3453.32 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
50. ENSGALG00000018384 ENSGALG00000018384 423.98 3412.59
51. ENO1 ENSGALG00000002377 418.92 3371.87 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
52. RPS25 ENSGALG00000007699 407.12 3276.89 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
53. RPL15 ENSGALG00000011290 396.17 3188.75 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
54. RPL37 ENSGALG00000014833 391.95 3154.79 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
55. gga-mir-3533 ENSGALG00000027736 387.74 3120.90 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
56. RPLP0 ENSGALG00000023294 380.99 3066.57 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
57. RPL10A ENSGALG00000002644 378.46 3046.21 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
58. ATP5G3 375.09 3019.08 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
59. CIRBP ENSGALG00000030918 371.72 2991.96 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
60. RPS20 ENSGALG00000014432 367.51 2958.07 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
61. RPL31 ENSGALG00000016775 359.08 2890.22 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
62. RPS13 ENSGALG00000006096 358.23 2883.38 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
63. HSPA8 ENSGALG00000006512 350.65 2822.36 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
64. HMGN5 ENSGALG00000007131 348.96 2808.76 high mobility group nucleosome binding domain 5, transcript variant X1
65. RPSA 343.91 2768.11 ribosomal protein SA
66. TCEB3 ENSGALG00000034625 332.95 2679.90 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
67. RPL4 ENSGALG00000007711 332.10 2673.06 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
68. RPL24 ENSGALG00000015339 323.68 2605.28 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
69. MT-ND1 MT-ND1 321.15 2584.92
70. RPS11 ENSGALG00000017299 317.78 2557.80 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
71. ENSGALG00000028992 ENSGALG00000028992 316.09 2544.19
72. RPL7 ENSGALG00000035252 316.09 2544.19 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
73. ENSGALG00000002696 ENSGALG00000002696 315.25 2537.43
74. MIF ENSGALG00000006326 311.88 2510.31 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
75. RPS3 ENSGALG00000017330 300.92 2422.09 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
76. STMN1 ENSGALG00000001475 298.39 2401.73 stathmin 1 [Source:NCBI gene;Acc:396057]
77. RPL5 ENSGALG00000005922 297.55 2394.97 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
78. SNRPD1 ENSGALG00000041334 295.86 2381.36 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
79. HMGB2 ENSGALG00000010745 295.02 2374.60 high mobility group box 2 [Source:NCBI gene;Acc:396482]
80. LDHB ENSGALG00000035836 268.89 2164.28 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
81. RPL36 ENSGALG00000000474 265.52 2137.16 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
82. TXN ENSGALG00000015704 263.83 2123.55 thioredoxin [Source:NCBI gene;Acc:396437]
83. RPL12 ENSGALG00000008806 257.93 2076.07 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
84. RPS2 ENSGALG00000005490 255.40 2055.70 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
85. MARCKSL1 ENSGALG00000032335 251.19 2021.82 MARCKS like 1 [Source:NCBI gene;Acc:770764]
86. ANP32B ENSGALG00000037483 245.29 1974.33 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
87. EEF1D 244.44 1967.49 eukaryotic translation elongation factor 1 delta, transcript variant X13
88. SNRPG ENSGALG00000028409 244.44 1967.49 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
89. PPIA ENSGALG00000028600 241.91 1947.12 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
90. RPS27A ENSGALG00000036790 235.17 1892.87 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
91. SHFM1 SHFM1 232.64 1872.51
92. ENSGALG00000018386 ENSGALG00000018386 230.11 1852.14
93. NME2 ENSGALG00000002932 225.06 1811.50 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
94. RPL22 ENSGALG00000000719 224.21 1804.66 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
95. EIF3J ENSGALG00000008187 219.16 1764.01 eukaryotic translation initiation factor 3 subunit J [Source:NCBI gene;Acc:415573]
96. RPS28 ENSGALG00000024398 210.73 1696.16 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
97. RPS17 ENSGALG00000002157 203.14 1635.06 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
98. PHB2 ENSGALG00000014567 201.45 1621.46 prohibitin 2 [Source:NCBI gene;Acc:771124]
99. HSP90AB1 ENSGALG00000010175 196.40 1580.81 heat shock protein 90 alpha family class B member 1 [Source:NCBI gene;Acc:396188]
100. SEC61G ENSGALG00000037863 195.55 1573.97 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA