Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_1, section s36.

Sample reads: 124,237. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 11714.31 94309.67
2. MT-ATP6 MT-ATP6 1935.58 15582.98
3. EEF1A EEF1A 1841.32 14824.12
4. RPLP1 ENSGALG00000030878 1519.09 12229.90 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
5. MT-CYB MT-CYB 1451.14 11682.85
6. RPS10 ENSGALG00000002813 1383.18 11135.72 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
7. RPS3A ENSGALG00000010077 1227.55 9882.77 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
8. MT-CO1 MT-CO1 1067.53 8594.48
9. RPS8 ENSGALG00000010124 997.38 8029.72 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
10. RPS29 ENSGALG00000012229 993.00 7994.45 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
11. MT-ND3 MT-ND3 973.27 7835.61
12. RPL35A ENSGALG00000007611, ENSGALG00000041230 942.58 7588.53 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
13. RPL6 ENSGALG00000004818 909.70 7323.82 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
14. RPL15 ENSGALG00000011290 815.44 6564.95 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
15. RPL38 ENSGALG00000001465 775.99 6247.35 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
16. RPL36AL ENSGALG00000004952 769.41 6194.37 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
17. MT-ND4 MT-ND4 765.02 6159.03
18. gga-mir-3527 gga-mir-3527 765.02 6159.03
19. RPL8 ENSGALG00000016232 710.22 5717.85 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
20. RPL23 ENSGALG00000001634 705.84 5682.58 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
21. RPL29 ENSGALG00000026978 703.65 5664.95 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
22. RPS21 ENSGALG00000005338 681.73 5488.48 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
23. GAPDH ENSGALG00000014442 664.19 5347.27 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
24. RPL13 ENSGALG00000006179 664.19 5347.27 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
25. RPS15A ENSGALG00000006771 662.00 5329.64 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
26. RPLP0 ENSGALG00000023294 648.85 5223.77 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
27. RPS12 ENSGALG00000013990 644.46 5188.42 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
28. TMSB4X ENSGALG00000026383 644.46 5188.42 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
29. RPL26 RPL26 640.08 5153.16
30. RPL23A ENSGALG00000003966 633.50 5100.19 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
31. RPL7A ENSGALG00000003197 618.16 4976.69 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
32. RPS4 RPS4 587.47 4729.61
33. RPL27A ENSGALG00000005948 583.08 4694.27 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
34. RPL4 ENSGALG00000007711 565.55 4553.14 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
35. RPL14 ENSGALG00000043379 563.36 4535.50 ribosomal protein L14
36. MT-ND5 MT-ND5 554.59 4464.90
37. RPS14 ENSGALG00000004588 554.59 4464.90 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
38. RPL27 ENSGALG00000002837 550.20 4429.56 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
39. RPS11 ENSGALG00000017299 548.01 4411.92 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
40. MT-ND6 MT-ND6 539.24 4341.32
41. RPLP2 ENSGALG00000034811 528.28 4253.08 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
42. RPSA 523.90 4217.82 ribosomal protein SA
43. ENSGALG00000018384 ENSGALG00000018384 504.17 4058.98
44. RPS23 ENSGALG00000015617 504.17 4058.98 ribosomal protein S23
45. RPS15 ENSGALG00000015195 480.06 3864.87 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
46. gga-mir-3533 ENSGALG00000027736 473.48 3811.90 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
47. RPS2 ENSGALG00000005490 460.33 3706.03 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
48. RPL35 ENSGALG00000035677 453.75 3653.05 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
49. RPL21 ENSGALG00000027035 447.18 3600.16 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
50. RPS25 ENSGALG00000007699 444.99 3582.53 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
51. RPL18A 442.79 3564.82 ribosomal protein L18a
52. RPL32 ENSGALG00000027142 442.79 3564.82 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
53. RPS16 ENSGALG00000026490 438.41 3529.56 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
54. RPL37 ENSGALG00000014833 427.45 3441.32 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
55. TCEB3 ENSGALG00000034625 425.26 3423.69 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
56. RPS13 ENSGALG00000006096 418.68 3370.71 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
57. RPL19 ENSGALG00000001658 414.30 3335.45 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
58. RPS7 ENSGALG00000016392 412.11 3317.82 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
59. MDK ENSGALG00000008367 370.46 2982.50 midkine [Source:NCBI gene;Acc:423196]
60. RPL5 ENSGALG00000005922 363.88 2929.53 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
61. RPS20 ENSGALG00000014432 363.88 2929.53 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
62. RPL12 ENSGALG00000008806 357.30 2876.55 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
63. RPS3 ENSGALG00000017330 357.30 2876.55 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
64. RPS6 ENSGALG00000015082 348.54 2806.03 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
65. PPIA ENSGALG00000028600 328.81 2647.19 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
66. RPS24 ENSGALG00000004871 328.81 2647.19 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
67. EEF1D 324.42 2611.84 eukaryotic translation elongation factor 1 delta, transcript variant X13
68. NME2 ENSGALG00000002932 320.04 2576.58 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
69. RPL24 ENSGALG00000015339 320.04 2576.58 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
70. MT-ND1 MT-ND1 315.65 2541.24
71. RPL31 ENSGALG00000016775 315.65 2541.24 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
72. RPL7 ENSGALG00000035252 309.08 2488.34 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
73. RPS17 ENSGALG00000002157 306.89 2470.71 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
74. GNB2L1 ENSGALG00000000122 289.35 2329.50 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
75. RPS27A ENSGALG00000036790 289.35 2329.50 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
76. RPL10A ENSGALG00000002644 287.16 2311.87 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
77. RPL36 ENSGALG00000000474 282.77 2276.53 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
78. ATP5G3 274.01 2206.00 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
79. ENSGALG00000028992 ENSGALG00000028992 274.01 2206.00
80. CRHOA CRHOA 271.81 2188.29
81. RPL9 ENSGALG00000000150 267.43 2153.03 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
82. STMN1 ENSGALG00000001475 258.66 2082.42 stathmin 1 [Source:NCBI gene;Acc:396057]
83. SNRPG ENSGALG00000028409 256.47 2064.79 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
84. RPS28 ENSGALG00000024398 254.28 2047.16 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
85. EEF1B2 ENSGALG00000008590 241.13 1941.29 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
86. TPT1 ENSGALG00000028872 238.93 1923.58 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
87. ENO1 ENSGALG00000002377 236.74 1905.95 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
88. ENSGALG00000028649 ENSGALG00000028649 236.74 1905.95
89. COX7C ENSGALG00000027963 232.36 1870.69 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
90. ZNF593 ENSGALG00000000542 232.36 1870.69 zinc finger protein 593 [Source:NCBI gene;Acc:419549]
91. ENSGALG00000002696 ENSGALG00000002696 227.97 1835.34
92. CIRBP ENSGALG00000030918 223.59 1800.08 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
93. HMGN5 ENSGALG00000007131 223.59 1800.08 high mobility group nucleosome binding domain 5, transcript variant X1
94. SNRPD1 ENSGALG00000041334 223.59 1800.08 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
95. ACTG1_1 ENSGALG00000001381 217.01 1747.11 Actin, gamma 1 [Source:NCBI gene;Acc:415296]
96. UBB ENSGALG00000004509 212.63 1711.84 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
97. RAN ENSGALG00000002569 208.24 1676.50 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
98. HMGB2 ENSGALG00000010745 206.05 1658.87 high mobility group box 2 [Source:NCBI gene;Acc:396482]
99. SEC61G ENSGALG00000037863 201.67 1623.61 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
100. COX4I1 197.28 1588.26 cytochrome c oxidase subunit 4I1, transcript variant X1
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA