Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_1, section s26.

Sample reads: 124,236. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 17417.20 140201.50
2. MT-ATP6 MT-ATP6 2313.94 18626.29
3. EEF1A EEF1A 2070.02 16662.83
4. MT-CYB MT-CYB 1740.40 14009.52
5. RPS10 ENSGALG00000002813 1667.88 13425.77 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
6. RPLP1 ENSGALG00000030878 1384.41 11143.95 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
7. MT-ND3 MT-ND3 1318.49 10613.32
8. RPS3A ENSGALG00000010077 1298.71 10454.10 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
9. MT-CO1 MT-CO1 1054.79 8490.64
10. RPS8 ENSGALG00000010124 1048.20 8437.59 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
11. MT-ND4 MT-ND4 988.86 7959.93
12. RPL38 ENSGALG00000001465 936.12 7535.39 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
13. RPS23 ENSGALG00000015617 916.35 7376.25 ribosomal protein S23
14. RPL8 ENSGALG00000016232 883.39 7110.94 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
15. RPS12 ENSGALG00000013990 857.02 6898.67 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
16. ENSGALG00000018384 ENSGALG00000018384 810.87 6527.18
17. RPL6 ENSGALG00000004818 797.68 6421.01 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
18. RPL7A ENSGALG00000003197 797.68 6421.01 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
19. RPS15A ENSGALG00000006771 784.50 6314.91 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
20. MT-ND5 MT-ND5 777.91 6261.86
21. RPS29 ENSGALG00000012229 764.72 6155.69 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
22. RPL26 RPL26 744.94 5996.47
23. RPS21 ENSGALG00000005338 731.76 5890.38 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
24. GAPDH ENSGALG00000014442 725.17 5837.33 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
25. RPL23 ENSGALG00000001634 718.57 5784.20 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
26. RPL27A ENSGALG00000005948 692.21 5572.01 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
27. RPL35A ENSGALG00000007611, ENSGALG00000041230 692.21 5572.01 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
28. RPS15 ENSGALG00000015195 679.02 5465.84 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
29. RPS14 ENSGALG00000004588 672.43 5412.79 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
30. RPL27 ENSGALG00000002837 665.84 5359.75 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
31. RPL37 ENSGALG00000014833 659.24 5306.62 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
32. RPL14 ENSGALG00000043379 646.06 5200.52 ribosomal protein L14
33. gga-mir-3527 gga-mir-3527 646.06 5200.52
34. RPS7 ENSGALG00000016392 639.47 5147.48 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
35. RPS25 ENSGALG00000007699 632.87 5094.35 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
36. RPS4 RPS4 632.87 5094.35
37. RPL36AL ENSGALG00000004952 619.69 4988.26 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
38. RPL15 ENSGALG00000011290 593.32 4775.99 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
39. RPL29 ENSGALG00000026978 580.13 4669.81 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
40. RPL21 ENSGALG00000027035 533.99 4298.41 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
41. RPL35 ENSGALG00000035677 533.99 4298.41 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
42. TMSB4X ENSGALG00000026383 527.39 4245.28 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
43. RPL13 ENSGALG00000006179 520.80 4192.23 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
44. RPL18A 501.02 4033.01 ribosomal protein L18a
45. MT-ND1 MT-ND1 468.06 3767.70
46. RPSA 468.06 3767.70 ribosomal protein SA
47. COX7C ENSGALG00000027963 454.88 3661.60 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
48. RPL23A ENSGALG00000003966 454.88 3661.60 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
49. STMN1 ENSGALG00000001475 454.88 3661.60 stathmin 1 [Source:NCBI gene;Acc:396057]
50. RPL31 ENSGALG00000016775 441.69 3555.43 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
51. RPL32 ENSGALG00000027142 441.69 3555.43 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
52. TCEB3 ENSGALG00000034625 428.51 3449.33 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
53. RPS20 ENSGALG00000014432 415.32 3343.16 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
54. MT-ND6 MT-ND6 408.73 3290.11
55. RPL5 ENSGALG00000005922 408.73 3290.11 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
56. RPLP0 ENSGALG00000023294 408.73 3290.11 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
57. RPS6 ENSGALG00000015082 402.14 3237.07 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
58. RPL19 ENSGALG00000001658 395.55 3184.02 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
59. RPLP2 ENSGALG00000034811 382.36 3077.85 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
60. RPL7 ENSGALG00000035252 369.18 2971.75 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
61. RPS16 ENSGALG00000026490 369.18 2971.75 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
62. RPS3 ENSGALG00000017330 355.99 2865.58 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
63. RPS24 ENSGALG00000004871 349.40 2812.53 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
64. NME2 ENSGALG00000002932 342.81 2759.48 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
65. RPS13 ENSGALG00000006096 323.03 2600.26 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
66. ANXA1 ENSGALG00000015148 309.84 2494.09 annexin A1 [Source:NCBI gene;Acc:404271]
67. RPL10A ENSGALG00000002644 309.84 2494.09 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
68. ENSGALG00000002696 ENSGALG00000002696 296.66 2387.99
69. RPS11 ENSGALG00000017299 296.66 2387.99 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
70. HMGN5 ENSGALG00000007131 290.07 2334.95 high mobility group nucleosome binding domain 5, transcript variant X1
71. ATP5G3 270.29 2175.73 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
72. RAN ENSGALG00000002569 270.29 2175.73 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
73. RPL24 ENSGALG00000015339 263.70 2122.68 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
74. RPL30 ENSGALG00000029897 263.70 2122.68 ribosomal protein L30 [Source:NCBI gene;Acc:425416]
75. gga-mir-3533 ENSGALG00000027736 257.10 2069.55 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
76. ENSGALG00000028992 ENSGALG00000028992 250.51 2016.51
77. RPS2 ENSGALG00000005490 250.51 2016.51 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
78. SNRPD1 ENSGALG00000041334 243.92 1963.46 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
79. RPL22L1 ENSGALG00000009312 237.33 1910.41 ribosomal protein L22 like 1 [Source:NCBI gene;Acc:100858296]
80. CRHOA CRHOA 224.14 1804.24
81. ENSGALG00000018386 ENSGALG00000018386 224.14 1804.24
82. EEF1B2 ENSGALG00000008590 217.55 1751.19 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
83. EEF1D 217.55 1751.19 eukaryotic translation elongation factor 1 delta, transcript variant X13
84. H3-IX H3-IX 217.55 1751.19
85. RPL36 ENSGALG00000000474 217.55 1751.19 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
86. RPS17 ENSGALG00000002157 217.55 1751.19 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
87. RPL37A ENSGALG00000011472 210.96 1698.14 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
88. RPL9 ENSGALG00000000150 210.96 1698.14 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
89. MDK ENSGALG00000008367 204.37 1645.10 midkine [Source:NCBI gene;Acc:423196]
90. TXN ENSGALG00000015704 204.37 1645.10 thioredoxin [Source:NCBI gene;Acc:396437]
91. RPL22 ENSGALG00000000719 197.77 1591.97 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
92. RPL4 ENSGALG00000007711 197.77 1591.97 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
93. PPIA ENSGALG00000028600 191.18 1538.92 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
94. RPL12 ENSGALG00000008806 191.18 1538.92 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
95. RPL39 ENSGALG00000008620 191.18 1538.92 ribosomal protein L39 [Source:NCBI gene;Acc:374132]
96. ENO1 ENSGALG00000002377 184.59 1485.88 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
97. RPS27A ENSGALG00000036790 184.59 1485.88 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
98. SHFM1 SHFM1 184.59 1485.88
99. COX6C ENSGALG00000035996 178.00 1432.83 cytochrome c oxidase subunit 6C [Source:NCBI gene;Acc:420243]
100. COX4I1 171.40 1379.70 cytochrome c oxidase subunit 4I1, transcript variant X1
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA