Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_1, section s16.

Sample reads: 124,236. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 11767.54 94739.80
2. MT-ATP6 MT-ATP6 2833.35 22811.14
3. MT-CYB MT-CYB 1700.63 13691.68
4. RPLP1 ENSGALG00000030878 1268.83 10215.28 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
5. EEF1A EEF1A 1267.26 10202.64
6. RPS10 ENSGALG00000002813 1055.27 8495.92 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
7. RPS29 ENSGALG00000012229 1016.94 8187.33 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
8. MT-ND5 MT-ND5 1012.24 8149.49
9. MT-CO1 MT-CO1 975.48 7853.53
10. TMSB4X ENSGALG00000026383 963.74 7759.02 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
11. RPL38 ENSGALG00000001465 886.30 7135.55 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
12. MT-ND6 MT-ND6 873.78 7034.75
13. MT-ND4 MT-ND4 829.20 6675.84
14. RPL35A ENSGALG00000007611, ENSGALG00000041230 818.24 6587.60 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
15. gga-mir-3527 gga-mir-3527 806.51 6493.17
16. RPS21 ENSGALG00000005338 768.18 6184.57 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
17. RPL27 ENSGALG00000002837 725.94 5844.50 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
18. GAPDH ENSGALG00000014442 674.31 5428.83 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
19. RPLP0 ENSGALG00000023294 670.40 5397.35 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
20. RPL15 ENSGALG00000011290 668.83 5384.71 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
21. RPL23 ENSGALG00000001634 665.70 5359.51 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
22. RPS3A ENSGALG00000010077 657.88 5296.55 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
23. RPS8 ENSGALG00000010124 646.15 5202.12 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
24. RPL23A ENSGALG00000003966 627.37 5050.92 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
25. RPS12 ENSGALG00000013990 613.29 4937.56 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
26. RPL6 ENSGALG00000004818 584.35 4704.57 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
27. RPL29 ENSGALG00000026978 574.18 4622.69 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
28. RPL26 RPL26 573.40 4616.41
29. RPS14 ENSGALG00000004588 566.36 4559.73 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
30. RPL14 ENSGALG00000043379 553.06 4452.65 ribosomal protein L14
31. gga-mir-3533 ENSGALG00000027736 549.15 4421.18 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
32. RPL8 ENSGALG00000016232 528.81 4257.42 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
33. RPL27A ENSGALG00000005948 520.20 4188.10 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
34. RPS23 ENSGALG00000015617 517.07 4162.90 ribosomal protein S23
35. RPL7A ENSGALG00000003197 514.73 4144.06 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
36. MT-ND3 MT-ND3 508.47 4093.66
37. RPL19 ENSGALG00000001658 507.69 4087.38 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
38. ATP5G3 506.12 4074.74 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
39. RPL18A 502.21 4043.26 ribosomal protein L18a
40. RPL35 ENSGALG00000035677 501.43 4036.98 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
41. RPL36AL ENSGALG00000004952 500.65 4030.71 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
42. RPLP2 ENSGALG00000034811 480.31 3866.95 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
43. RPS15A ENSGALG00000006771 468.57 3772.43 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
44. ENSGALG00000018384 ENSGALG00000018384 456.84 3677.99
45. RPS7 ENSGALG00000016392 443.54 3570.92 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
46. RPL37 ENSGALG00000014833 437.28 3520.52 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
47. RPS13 ENSGALG00000006096 413.03 3325.28 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
48. RPS4 RPS4 408.34 3287.52
49. RPL32 ENSGALG00000027142 398.17 3205.64 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
50. RPS25 ENSGALG00000007699 396.61 3193.08 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
51. RPL4 ENSGALG00000007711 395.82 3186.72 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
52. RAN ENSGALG00000002569 394.26 3174.17 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
53. PPIA ENSGALG00000028600 384.87 3098.57 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
54. NME2 ENSGALG00000002932 381.74 3073.37 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
55. MT-ND1 MT-ND1 378.61 3048.17
56. RPL24 ENSGALG00000015339 372.36 2997.85 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
57. RPS11 ENSGALG00000017299 371.57 2991.49 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
58. RPS16 ENSGALG00000026490 368.44 2966.29 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
59. TCEB3 ENSGALG00000034625 362.97 2922.25 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
60. RPL31 ENSGALG00000016775 353.58 2846.65 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
61. RPS15 ENSGALG00000015195 351.23 2827.73 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
62. RPSA 342.63 2758.49 ribosomal protein SA
63. RPL21 ENSGALG00000027035 330.90 2664.06 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
64. RPL13 ENSGALG00000006179 319.94 2575.82 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
65. MDK ENSGALG00000008367 316.03 2544.34 midkine [Source:NCBI gene;Acc:423196]
66. TXN ENSGALG00000015704 316.03 2544.34 thioredoxin [Source:NCBI gene;Acc:396437]
67. RPS27A ENSGALG00000036790 310.56 2500.30 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
68. RPS24 ENSGALG00000004871 301.95 2430.98 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
69. RPS6 ENSGALG00000015082 286.31 2305.07 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
70. MIF ENSGALG00000006326 285.52 2298.71 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
71. RPS2 ENSGALG00000005490 285.52 2298.71 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
72. RPL12 ENSGALG00000008806 283.18 2279.87 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
73. RPS3 ENSGALG00000017330 281.61 2267.23 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
74. RPS20 ENSGALG00000014432 273.79 2204.27 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
75. STMN1 ENSGALG00000001475 268.32 2160.23 stathmin 1 [Source:NCBI gene;Acc:396057]
76. ENSGALG00000028649 ENSGALG00000028649 258.15 2078.35
77. RPL36 ENSGALG00000000474 254.23 2046.79 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
78. RPL7 ENSGALG00000035252 251.89 2027.95 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
79. CIRBP ENSGALG00000030918 250.32 2015.31 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
80. ACTG1_1 ENSGALG00000001381 242.50 1952.35 Actin, gamma 1 [Source:NCBI gene;Acc:415296]
81. ENSGALG00000028992 ENSGALG00000028992 240.15 1933.43
82. ANP32B ENSGALG00000037483 239.37 1927.15 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
83. COX6C ENSGALG00000035996 237.02 1908.23 cytochrome c oxidase subunit 6C [Source:NCBI gene;Acc:420243]
84. RPL22 ENSGALG00000000719 237.02 1908.23 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
85. RPL5 ENSGALG00000005922 237.02 1908.23 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
86. SNRPD1 ENSGALG00000041334 235.46 1895.68 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
87. ENSGALG00000002696 ENSGALG00000002696 227.64 1832.72
88. RPL10A ENSGALG00000002644 226.86 1826.44 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
89. SET ENSGALG00000004701 226.07 1820.08 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
90. HSPA8 ENSGALG00000006512 222.94 1794.88 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
91. SNRPG ENSGALG00000028409 222.16 1788.60 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
92. EEF1B2 ENSGALG00000008590 217.47 1750.84 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
93. EEF1D 216.69 1744.56 eukaryotic translation elongation factor 1 delta, transcript variant X13
94. HMGN5 ENSGALG00000007131 213.56 1719.36 high mobility group nucleosome binding domain 5, transcript variant X1
95. HMGB2 ENSGALG00000010745 209.65 1687.88 high mobility group box 2 [Source:NCBI gene;Acc:396482]
96. RPS17 ENSGALG00000002157 205.73 1656.32 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
97. SEC61G ENSGALG00000037863 205.73 1656.32 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
98. SHFM1 SHFM1 205.73 1656.32
99. RPL9 ENSGALG00000000150 197.91 1593.36 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
100. COX7C ENSGALG00000027963 193.22 1555.60 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA