Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_1, section s14.

Sample reads: 124,246. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 9629.67 77510.76
2. MT-ATP6 MT-ATP6 2122.17 17081.69
3. RPLP1 ENSGALG00000030878 1394.13 11221.58 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
4. EEF1A EEF1A 1344.31 10820.57
5. MT-CYB MT-CYB 1304.36 10499.00
6. RPS10 ENSGALG00000002813 1253.64 10090.75 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
7. TMSB4X ENSGALG00000026383 1203.82 9689.74 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
8. RPS3A ENSGALG00000010077 1142.78 9198.42 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
9. RPS29 ENSGALG00000012229 885.59 7128.26 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
10. RPS8 ENSGALG00000010124 867.63 6983.69 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
11. MT-ND6 MT-ND6 819.60 6597.09
12. RPL35A ENSGALG00000007611, ENSGALG00000041230 802.10 6456.23 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
13. MT-CO1 MT-CO1 785.94 6326.16
14. MT-ND5 MT-ND5 780.10 6279.15
15. RPL23 ENSGALG00000001634 732.53 5896.25 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
16. MT-ND4 MT-ND4 723.55 5823.97
17. RPL38 ENSGALG00000001465 707.84 5697.52 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
18. RPS12 ENSGALG00000013990 697.97 5618.07 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
19. RPS21 ENSGALG00000005338 669.24 5386.82 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
20. RPL8 ENSGALG00000016232 634.23 5105.02 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
21. RPL15 ENSGALG00000011290 626.60 5043.60 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
22. GAPDH ENSGALG00000014442 584.85 4707.55 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
23. RPL27 ENSGALG00000002837 581.26 4678.65 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
24. gga-mir-3527 gga-mir-3527 545.36 4389.69
25. RPL18A 544.01 4378.82 ribosomal protein L18a
26. RPL29 ENSGALG00000026978 538.17 4331.82 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
27. RPL27A ENSGALG00000005948 533.24 4292.13 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
28. RPL14 ENSGALG00000043379 527.85 4248.75 ribosomal protein L14
29. RPL26 RPL26 526.50 4237.88
30. RPL36AL ENSGALG00000004952 524.71 4223.47 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
31. RPS14 ENSGALG00000004588 519.77 4183.71 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
32. RPL23A ENSGALG00000003966 517.08 4162.06 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
33. RPL19 ENSGALG00000001658 516.63 4158.44 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
34. RPL6 ENSGALG00000004818 510.34 4107.81 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
35. RPS23 ENSGALG00000015617 498.23 4010.33 ribosomal protein S23
36. RPLP0 ENSGALG00000023294 497.33 4003.09 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
37. RPL7A ENSGALG00000003197 494.64 3981.44 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
38. RPS15A ENSGALG00000006771 482.07 3880.26 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
39. RAN ENSGALG00000002569 481.17 3873.01 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
40. RPS7 ENSGALG00000016392 476.68 3836.87 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
41. RPS4 RPS4 465.01 3742.94
42. RPL35 ENSGALG00000035677 462.32 3721.29 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
43. gga-mir-3533 ENSGALG00000027736 452.89 3645.38 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
44. ATP5G3 452.44 3641.76 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
45. ENSGALG00000018384 ENSGALG00000018384 450.20 3623.73
46. MT-ND3 MT-ND3 449.75 3620.11
47. RPLP2 ENSGALG00000034811 433.14 3486.41 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
48. RPL32 ENSGALG00000027142 389.15 3132.33 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
49. RPL21 ENSGALG00000027035 385.12 3099.89 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
50. RPL4 ENSGALG00000007711 381.08 3067.37 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
51. RPL37 ENSGALG00000014833 378.38 3045.64 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
52. RPS15 ENSGALG00000015195 369.85 2976.98 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
53. RPS16 ENSGALG00000026490 369.41 2973.44 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
54. RPL13 ENSGALG00000006179 362.22 2915.57 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
55. RPL31 ENSGALG00000016775 360.43 2901.16 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
56. TCEB3 ENSGALG00000034625 358.18 2883.05 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
57. PPIA ENSGALG00000028600 345.62 2781.95 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
58. RPS13 ENSGALG00000006096 342.92 2760.22 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
59. CIRBP ENSGALG00000030918 333.95 2688.02 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
60. RPSA 333.95 2688.02 ribosomal protein SA
61. RPS20 ENSGALG00000014432 330.80 2662.66 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
62. RPS25 ENSGALG00000007699 325.87 2622.98 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
63. RPS24 ENSGALG00000004871 321.38 2586.84 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
64. TXN ENSGALG00000015704 321.38 2586.84 thioredoxin [Source:NCBI gene;Acc:396437]
65. RPL24 ENSGALG00000015339 315.99 2543.45 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
66. RPS11 ENSGALG00000017299 312.40 2514.56 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
67. RPL12 ENSGALG00000008806 294.00 2366.45 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
68. HSPA8 ENSGALG00000006512 287.27 2312.28 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
69. HMGB2 ENSGALG00000010745 285.02 2294.17 high mobility group box 2 [Source:NCBI gene;Acc:396482]
70. NME2 ENSGALG00000002932 278.29 2240.00 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
71. SEC61G ENSGALG00000037863 269.31 2167.72 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
72. STMN1 ENSGALG00000001475 269.31 2167.72 stathmin 1 [Source:NCBI gene;Acc:396057]
73. ENSGALG00000028649 ENSGALG00000028649 262.13 2109.93
74. RPS6 ENSGALG00000015082 262.13 2109.93 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
75. MT-ND1 MT-ND1 261.68 2106.30
76. RPS3 ENSGALG00000017330 258.99 2084.65 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
77. UBB ENSGALG00000004509 256.29 2062.92 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
78. SNRPG ENSGALG00000028409 252.70 2034.02 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
79. ENSGALG00000028992 ENSGALG00000028992 248.66 2001.50
80. ENSGALG00000002696 ENSGALG00000002696 242.38 1950.96
81. HMGN5 ENSGALG00000007131 240.58 1936.47 high mobility group nucleosome binding domain 5, transcript variant X1
82. RPS2 ENSGALG00000005490 237.89 1914.81 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
83. RPL10A ENSGALG00000002644 236.10 1900.41 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
84. ENO1 ENSGALG00000002377 234.75 1889.54 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
85. RPL5 ENSGALG00000005922 233.40 1878.67 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
86. ACTG1_1 ENSGALG00000001381 232.06 1867.89 Actin, gamma 1 [Source:NCBI gene;Acc:415296]
87. SNRPD1 ENSGALG00000041334 232.06 1867.89 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
88. MIF ENSGALG00000006326 225.32 1813.64 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
89. SHFM1 SHFM1 225.32 1813.64
90. RPL7 ENSGALG00000035252 224.87 1810.01 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
91. RPS27A ENSGALG00000036790 224.43 1806.47 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
92. MDK ENSGALG00000008367 223.08 1795.61 midkine [Source:NCBI gene;Acc:423196]
93. RPS17 ENSGALG00000002157 222.18 1788.36 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
94. RPL22 ENSGALG00000000719 219.94 1770.33 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
95. ANP32B ENSGALG00000037483 215.00 1730.57 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
96. EIF3J ENSGALG00000008187 214.10 1723.33 eukaryotic translation initiation factor 3 subunit J [Source:NCBI gene;Acc:415573]
97. RPL36 ENSGALG00000000474 212.76 1712.54 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
98. COX7A2 ENSGALG00000015906 205.57 1654.67 cytochrome c oxidase subunit 7A2 [Source:NCBI gene;Acc:772260]
99. COX6C ENSGALG00000035996 202.43 1629.39 cytochrome c oxidase subunit 6C [Source:NCBI gene;Acc:420243]
100. H3-IX H3-IX 200.19 1611.36
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA