Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_1, section s12.

Sample reads: 124,247. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 10872.81 87511.62
2. TMSB4X ENSGALG00000026383 1827.27 14707.09 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
3. RPS10 ENSGALG00000002813 1665.39 13404.17 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
4. EEF1A EEF1A 1347.95 10849.20
5. RPS3A ENSGALG00000010077 1320.31 10626.74 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
6. RPLP1 ENSGALG00000030878 1255.56 10105.58 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
7. RPS12 ENSGALG00000013990 1000.50 8052.69 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
8. RPS8 ENSGALG00000010124 973.65 7836.58 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
9. RPL35A ENSGALG00000007611, ENSGALG00000041230 955.49 7690.42 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
10. RPS15A ENSGALG00000006771 926.27 7455.24 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
11. RPL23 ENSGALG00000001634 923.11 7429.80 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
12. RPL36AL ENSGALG00000004952 868.62 6991.23 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
13. RPS29 ENSGALG00000012229 820.46 6603.61 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
14. RPL8 ENSGALG00000016232 794.40 6393.86 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
15. RPL38 ENSGALG00000001465 782.55 6298.48 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
16. MT-ATP6 MT-ATP6 765.18 6158.68
17. RPL6 ENSGALG00000004818 754.91 6076.02 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
18. RPL7A ENSGALG00000003197 740.70 5961.65 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
19. RPL27 ENSGALG00000002837 734.38 5910.78 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
20. RPL26 RPL26 723.33 5821.84
21. RPL14 ENSGALG00000043379 707.53 5694.67 ribosomal protein L14
22. RAN ENSGALG00000002569 705.95 5681.96 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
23. RPS23 ENSGALG00000015617 677.53 5453.21 ribosomal protein S23
24. RPS21 ENSGALG00000005338 676.74 5446.85 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
25. RPL27A ENSGALG00000005948 650.68 5237.11 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
26. RPL21 ENSGALG00000027035 641.99 5167.16 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
27. RPS14 ENSGALG00000004588 633.31 5097.30 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
28. ENSGALG00000018384 ENSGALG00000018384 630.15 5071.87
29. RPL13 ENSGALG00000006179 629.36 5065.51 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
30. GAPDH ENSGALG00000014442 611.20 4919.35 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
31. MT-CO1 MT-CO1 600.93 4836.69
32. RPL19 ENSGALG00000001658 600.14 4830.33 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
33. RPL18A 593.03 4773.10 ribosomal protein L18a
34. RPL23A ENSGALG00000003966 587.51 4728.67 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
35. MT-CYB MT-CYB 559.08 4499.85
36. RPL29 ENSGALG00000026978 551.18 4436.26 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
37. RPS25 ENSGALG00000007699 533.81 4296.46 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
38. RPL35 ENSGALG00000035677 526.70 4239.23 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
39. RPS7 ENSGALG00000016392 514.86 4143.94 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
40. HMGN5 ENSGALG00000007131 480.11 3864.25 high mobility group nucleosome binding domain 5, transcript variant X1
41. RPL15 ENSGALG00000011290 465.90 3749.87 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
42. MT-ND3 MT-ND3 465.11 3743.52
43. RPS4 RPS4 455.63 3667.21
44. RPS15 ENSGALG00000015195 444.58 3578.28 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
45. RPS16 ENSGALG00000026490 440.63 3546.48 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
46. MT-ND6 MT-ND6 413.78 3330.38
47. RPL32 ENSGALG00000027142 412.20 3317.66 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
48. RPL37 ENSGALG00000014833 410.62 3304.94 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
49. TCEB3 ENSGALG00000034625 410.62 3304.94 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
50. RPL10A ENSGALG00000002644 409.83 3298.59 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
51. ENSGALG00000028992 ENSGALG00000028992 400.36 3222.36
52. TXN ENSGALG00000015704 392.46 3158.78 thioredoxin [Source:NCBI gene;Acc:396437]
53. RPS24 ENSGALG00000004871 390.88 3146.06 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
54. RPS3 ENSGALG00000017330 384.56 3095.20 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
55. RPLP2 ENSGALG00000034811 382.98 3082.48 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
56. RPL7 ENSGALG00000035252 375.88 3025.33 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
57. RPSA 370.35 2980.82 ribosomal protein SA
58. HSPA8 ENSGALG00000006512 363.24 2923.60 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
59. ENSGALG00000002696 ENSGALG00000002696 355.35 2860.09
60. ENSGALG00000018386 ENSGALG00000018386 354.56 2853.74
61. RPL31 ENSGALG00000016775 354.56 2853.74 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
62. MT-ND4 MT-ND4 351.40 2828.30
63. RPS6 ENSGALG00000015082 349.82 2815.58 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
64. RPL24 ENSGALG00000015339 342.71 2758.36 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
65. ENO1 ENSGALG00000002377 330.08 2656.70 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
66. STMN1 ENSGALG00000001475 317.44 2554.97 stathmin 1 [Source:NCBI gene;Acc:396057]
67. gga-mir-3533 ENSGALG00000027736 315.86 2542.25 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
68. UBB ENSGALG00000004509 306.39 2466.03 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
69. RPS13 ENSGALG00000006096 304.81 2453.31 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
70. RPL4 ENSGALG00000007711 301.65 2427.88 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
71. RPL5 ENSGALG00000005922 300.07 2415.16 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
72. RPS20 ENSGALG00000014432 299.28 2408.80 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
73. CIRBP ENSGALG00000030918 287.44 2313.51 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
74. RPL9 ENSGALG00000000150 285.07 2294.43 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
75. SEC61G ENSGALG00000037863 282.70 2275.36 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
76. HSP90AA1 ENSGALG00000033212 280.33 2256.28 heat shock protein 90 alpha family class A member 1 [Source:NCBI gene;Acc:423463]
77. MIF ENSGALG00000006326 277.17 2230.85 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
78. RPS11 ENSGALG00000017299 276.38 2224.49 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
79. RPL22 ENSGALG00000000719 274.80 2211.77 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
80. SHFM1 SHFM1 271.64 2186.34
81. ATP5G3 269.27 2167.26 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
82. MT-ND5 MT-ND5 266.90 2148.19
83. RPLP0 ENSGALG00000023294 255.06 2052.89 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
84. gga-mir-3527 gga-mir-3527 255.06 2052.89
85. HMGB2 ENSGALG00000010745 245.58 1976.59 high mobility group box 2 [Source:NCBI gene;Acc:396482]
86. RPS2 ENSGALG00000005490 245.58 1976.59 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
87. RPL36 ENSGALG00000000474 243.21 1957.52 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
88. AKAP12 ENSGALG00000036240 230.58 1855.86 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
89. EIF3J ENSGALG00000008187 227.42 1830.43 eukaryotic translation initiation factor 3 subunit J [Source:NCBI gene;Acc:415573]
90. SNRPG ENSGALG00000028409 219.53 1766.92 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
91. H2AFZ ENSGALG00000014023 218.74 1760.57 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
92. RPL39 ENSGALG00000008620 213.21 1716.06 ribosomal protein L39 [Source:NCBI gene;Acc:374132]
93. EEF1D 207.68 1671.55 eukaryotic translation elongation factor 1 delta, transcript variant X13
94. RPS27A ENSGALG00000036790 196.62 1582.53 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
95. NDUFB9 ENSGALG00000042242 192.68 1550.82 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
96. RPL30 ENSGALG00000029897 191.89 1544.46 ribosomal protein L30 [Source:NCBI gene;Acc:425416]
97. NME2 ENSGALG00000002932 191.10 1538.10 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
98. MYL12A ENSGALG00000014854 190.31 1531.74 myosin, light chain 12A, regulatory, non-sarcomeric [Source:NCBI gene;Acc:396284]
99. HSP90AB1 ENSGALG00000010175 187.15 1506.31 heat shock protein 90 alpha family class B member 1 [Source:NCBI gene;Acc:396188]
100. EEF1B2 ENSGALG00000008590 185.57 1493.59 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA