Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s94.

Sample reads: 113,601. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3810.30 33541.46
2. EEF1A EEF1A 1583.85 13942.38
3. CIRBP ENSGALG00000030918 1036.62 9125.20 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
4. RPLP1 ENSGALG00000030878 1014.73 8932.51 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
5. RPS10 ENSGALG00000002813 1005.35 8849.94 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
6. RPL35A ENSGALG00000007611, ENSGALG00000041230 1002.22 8822.38 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
7. RPL23A ENSGALG00000003966 897.46 7900.20 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
8. gga-mir-3533 ENSGALG00000027736 808.34 7115.69 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. MT-ATP6 MT-ATP6 802.09 7060.67
10. RPL15 ENSGALG00000011290 695.77 6124.75 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
11. RPS23 ENSGALG00000015617 684.82 6028.36 ribosomal protein S23
12. RPLP0 ENSGALG00000023294 625.41 5505.38 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
13. MT-ND5 MT-ND5 623.85 5491.65
14. RPL4 ENSGALG00000007711 622.28 5477.83 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
15. RPS21 ENSGALG00000005338 611.34 5381.53 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
16. RPL13 ENSGALG00000006179 572.25 5037.43 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
17. gga-mir-3527 gga-mir-3527 558.18 4913.57
18. RPS8 ENSGALG00000010124 545.67 4803.45 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
19. GAPDH ENSGALG00000014442 537.85 4734.61 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
20. RPS3A ENSGALG00000010077 536.29 4720.88 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
21. RPL19 ENSGALG00000001658 515.96 4541.91 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
22. RPS11 ENSGALG00000017299 515.96 4541.91 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
23. RPSA 497.20 4376.77 ribosomal protein SA
24. RPS15 ENSGALG00000015195 489.38 4307.93 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
25. PPIA ENSGALG00000028600 484.69 4266.65 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
26. RPL8 ENSGALG00000016232 483.13 4252.92 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
27. RPL27A ENSGALG00000005948 480.00 4225.36 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
28. RPL7A ENSGALG00000003197 480.00 4225.36 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
29. RPL27 ENSGALG00000002837 476.87 4197.81 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
30. RPS2 ENSGALG00000005490 470.62 4142.79 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
31. RPL29 ENSGALG00000026978 465.93 4101.51 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
32. SNRPD1 ENSGALG00000041334 459.68 4046.49 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
33. RPS15A ENSGALG00000006771 458.11 4032.67 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
34. RPL26 RPL26 444.04 3908.81
35. RPS29 ENSGALG00000012229 444.04 3908.81 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
36. RPL36 ENSGALG00000000474 422.15 3716.12 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
37. RPL35 ENSGALG00000035677 420.59 3702.39 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
38. MT-ND4 MT-ND4 412.77 3633.55
39. TXN ENSGALG00000015704 409.64 3606.00 thioredoxin [Source:NCBI gene;Acc:396437]
40. RPL38 ENSGALG00000001465 406.52 3578.53 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
41. RPS6 ENSGALG00000015082 394.01 3468.41 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
42. HMGN5 ENSGALG00000007131 389.32 3427.12 high mobility group nucleosome binding domain 5, transcript variant X1
43. RPL32 ENSGALG00000027142 389.32 3427.12 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
44. RPL37 ENSGALG00000014833 381.50 3358.28 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
45. RPL37A ENSGALG00000011472 378.37 3330.73 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
46. RPS16 ENSGALG00000026490 375.25 3303.27 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
47. NME2 ENSGALG00000002932 373.68 3289.45 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
48. TMSB4X ENSGALG00000026383 364.30 3206.87 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
49. GNB2L1 ENSGALG00000000122 358.05 3151.86 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
50. RPS12 ENSGALG00000013990 353.36 3110.57 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
51. RPS27A ENSGALG00000036790 351.79 3096.75 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
52. RPS17 ENSGALG00000002157 345.54 3041.73 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
53. RPS4 RPS4 340.85 3000.45
54. MT-CYB MT-CYB 339.28 2986.63
55. RPL23 ENSGALG00000001634 314.27 2766.47 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
56. MT-CO1 MT-CO1 312.70 2752.65
57. RPS14 ENSGALG00000004588 301.76 2656.35 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
58. RPL21 ENSGALG00000027035 297.07 2615.06 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
59. TCEB3 ENSGALG00000034625 297.07 2615.06 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
60. RPS7 ENSGALG00000016392 287.69 2532.49 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
61. AKAP12 ENSGALG00000036240 281.43 2477.38 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
62. ANP32B ENSGALG00000037483 279.87 2463.65 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
63. EIF5A2 ENSGALG00000009309 278.31 2449.92 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
64. RPL6 ENSGALG00000004818 272.05 2394.81 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
65. UBB ENSGALG00000004509 272.05 2394.81 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
66. RPL18A 270.49 2381.08 ribosomal protein L18a
67. RPS20 ENSGALG00000014432 270.49 2381.08 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
68. MDK ENSGALG00000008367 268.93 2367.35 midkine [Source:NCBI gene;Acc:423196]
69. PHB2 ENSGALG00000014567 268.93 2367.35 prohibitin 2 [Source:NCBI gene;Acc:771124]
70. RPL12 ENSGALG00000008806 257.98 2270.96 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
71. RPL24 ENSGALG00000015339 257.98 2270.96 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
72. RPL7 ENSGALG00000035252 256.42 2257.22 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
73. ATP5G3 253.29 2229.67 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
74. MT-ND3 MT-ND3 253.29 2229.67
75. RPS13 ENSGALG00000006096 250.16 2202.12 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
76. H3-IX H3-IX 247.04 2174.65
77. STMN1 ENSGALG00000001475 245.47 2160.83 stathmin 1 [Source:NCBI gene;Acc:396057]
78. RPL36AL ENSGALG00000004952 243.91 2147.10 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
79. SLC25A6_1 ENSGALG00000016691 242.35 2133.37 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
80. ENSGALG00000002696 ENSGALG00000002696 239.22 2105.82
81. PRDX1 ENSGALG00000010243 239.22 2105.82 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
82. ENO1 ENSGALG00000002377 234.53 2064.53 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
83. EIF4G2 ENSGALG00000005587 232.96 2050.71 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
84. RPL14 ENSGALG00000043379 232.96 2050.71 ribosomal protein L14
85. RPS28 ENSGALG00000024398 232.96 2050.71 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
86. RPL5 ENSGALG00000005922 231.40 2036.98 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
87. SEC61G ENSGALG00000037863 225.15 1981.96 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
88. FKBP4 ENSGALG00000014331 223.58 1968.14 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
89. LDHB ENSGALG00000035836 220.46 1940.67 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
90. RAN ENSGALG00000002569 220.46 1940.67 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
91. CRHOA CRHOA 215.77 1899.39
92. EEF1D 204.82 1803.00 eukaryotic translation elongation factor 1 delta, transcript variant X13
93. RPLP2 ENSGALG00000034811 204.82 1803.00 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
94. SET ENSGALG00000004701 204.82 1803.00 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
95. RPL31 ENSGALG00000016775 195.44 1720.43 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
96. HSPA8 ENSGALG00000006512 192.31 1692.87 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
97. ENSGALG00000028992 ENSGALG00000028992 190.75 1679.14
98. HNRNPDL ENSGALG00000023199 184.50 1624.12 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
99. MT-ND1 MT-ND1 182.93 1610.30
100. GPC4 ENSGALG00000006080 181.37 1596.57 glypican 4 [Source:HGNC Symbol;Acc:HGNC:4452]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA