Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s93.

Sample reads: 113,519. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3251.14 28640.93
2. EEF1A EEF1A 1299.51 11448.04
3. gga-mir-3533 ENSGALG00000027736 1108.61 9766.30 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
4. CIRBP ENSGALG00000030918 1078.97 9505.19 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
5. RPL35A ENSGALG00000007611, ENSGALG00000041230 931.94 8209.93 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
6. MT-ATP6 MT-ATP6 894.00 7875.70
7. RPL23A ENSGALG00000003966 840.65 7405.71 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
8. RPS10 ENSGALG00000002813 819.31 7217.71 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
9. RPLP1 ENSGALG00000030878 775.43 6831.15 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
10. RPLP0 ENSGALG00000023294 713.78 6288.05 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
11. RPL4 ENSGALG00000007711 691.25 6089.57 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
12. MT-ND5 MT-ND5 672.28 5922.45
13. MDK ENSGALG00000008367 671.10 5912.06 midkine [Source:NCBI gene;Acc:423196]
14. RPL15 ENSGALG00000011290 652.12 5744.85 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
15. RPS23 ENSGALG00000015617 647.38 5703.10 ribosomal protein S23
16. GAPDH ENSGALG00000014442 602.33 5306.23 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
17. RPL27A ENSGALG00000005948 567.94 5003.27 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
18. RPS21 ENSGALG00000005338 540.67 4763.03 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
19. RPSA 528.81 4658.55 ribosomal protein SA
20. RPL13 ENSGALG00000006179 518.14 4564.56 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
21. RPL19 ENSGALG00000001658 505.10 4449.68 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
22. MT-ND4 MT-ND4 490.87 4324.32
23. RPS2 ENSGALG00000005490 475.46 4188.57 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
24. RPL7A ENSGALG00000003197 474.27 4178.08 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
25. SNRPD1 ENSGALG00000041334 471.90 4157.20 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
26. RPS8 ENSGALG00000010124 469.53 4136.33 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
27. PPIA ENSGALG00000028600 468.34 4125.84 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
28. RPL27 ENSGALG00000002837 467.16 4115.45 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
29. RPL38 ENSGALG00000001465 448.19 3948.33 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
30. RPS29 ENSGALG00000012229 448.19 3948.33 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
31. RPL8 ENSGALG00000016232 447.00 3937.85 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
32. RPS3A ENSGALG00000010077 436.33 3843.85 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
33. RPL29 ENSGALG00000026978 433.96 3822.97 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
34. RPS11 ENSGALG00000017299 428.03 3770.73 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
35. gga-mir-3527 gga-mir-3527 424.47 3739.37
36. RPS6 ENSGALG00000015082 420.92 3708.10 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
37. RPS15 ENSGALG00000015195 419.73 3697.61 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
38. RPL35 ENSGALG00000035677 410.25 3614.10 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
39. RPS15A ENSGALG00000006771 410.25 3614.10 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
40. RPL36 ENSGALG00000000474 407.87 3593.13 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
41. RPS16 ENSGALG00000026490 404.32 3561.86 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
42. RPL37 ENSGALG00000014833 403.13 3551.37 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
43. GNB2L1 ENSGALG00000000122 400.76 3530.50 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
44. MT-CYB MT-CYB 394.83 3478.26
45. RPS4 RPS4 392.46 3457.38
46. RPL26 RPL26 388.90 3426.02
47. RPL32 ENSGALG00000027142 388.90 3426.02 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
48. RPL12 ENSGALG00000008806 386.53 3405.14 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
49. TMSB4X ENSGALG00000026383 384.16 3384.26 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
50. TXN ENSGALG00000015704 371.12 3269.38 thioredoxin [Source:NCBI gene;Acc:396437]
51. RPS12 ENSGALG00000013990 364.00 3206.66 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
52. NME2 ENSGALG00000002932 361.63 3185.78 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
53. RPL18A 330.80 2914.18 ribosomal protein L18a
54. RPS27A ENSGALG00000036790 329.62 2903.79 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
55. HMGN5 ENSGALG00000007131 322.51 2841.15 high mobility group nucleosome binding domain 5, transcript variant X1
56. RPS28 ENSGALG00000024398 318.95 2809.79 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
57. RPL23 ENSGALG00000001634 301.16 2653.07 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
58. RPL14 ENSGALG00000043379 295.23 2600.83 ribosomal protein L14
59. RPL24 ENSGALG00000015339 292.86 2579.95 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
60. RPS14 ENSGALG00000004588 289.31 2548.68 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
61. MT-CO1 MT-CO1 285.75 2517.32
62. PHB2 ENSGALG00000014567 283.38 2496.44 prohibitin 2 [Source:NCBI gene;Acc:771124]
63. TCEB3 ENSGALG00000034625 283.38 2496.44 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
64. RPL21 ENSGALG00000027035 277.45 2444.20 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
65. RPS7 ENSGALG00000016392 277.45 2444.20 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
66. AKAP12 ENSGALG00000036240 276.26 2433.71 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
67. RPL37A ENSGALG00000011472 273.89 2412.83 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
68. RPL7 ENSGALG00000035252 271.52 2391.96 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
69. SEC61G ENSGALG00000037863 262.04 2308.44 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
70. ANP32B ENSGALG00000037483 259.66 2287.48 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
71. EEF1D 259.66 2287.48 eukaryotic translation elongation factor 1 delta, transcript variant X13
72. ENSGALG00000028649 ENSGALG00000028649 256.11 2256.20
73. ENO1 ENSGALG00000002377 254.92 2245.72 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
74. CRHOA CRHOA 252.55 2224.84
75. RPL5 ENSGALG00000005922 251.36 2214.36 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
76. RPL36AL ENSGALG00000004952 245.44 2162.20 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
77. PRDX1 ENSGALG00000010243 244.25 2151.72 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
78. ATP5G3 240.69 2120.36 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
79. GPC4 ENSGALG00000006080 237.14 2089.09 glypican 4 [Source:HGNC Symbol;Acc:HGNC:4452]
80. STMN1 ENSGALG00000001475 235.95 2078.60 stathmin 1 [Source:NCBI gene;Acc:396057]
81. RAN ENSGALG00000002569 233.58 2057.72 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
82. UBB ENSGALG00000004509 232.39 2047.24 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
83. RPS13 ENSGALG00000006096 231.21 2036.85 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
84. SET ENSGALG00000004701 230.02 2026.36 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
85. RPS20 ENSGALG00000014432 228.84 2015.97 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
86. ALDOC ENSGALG00000026077 226.46 1995.00 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
87. H3-IX H3-IX 226.46 1995.00
88. RPLP2 ENSGALG00000034811 225.28 1984.60 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
89. ENSGALG00000002696 ENSGALG00000002696 224.09 1974.12
90. RPS25 ENSGALG00000007699 222.91 1963.73 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
91. EIF5A2 ENSGALG00000009309 219.35 1932.36 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
92. RPL6 ENSGALG00000004818 215.79 1901.00 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
93. LDHB ENSGALG00000035836 213.42 1880.12 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
94. MT-ND3 MT-ND3 212.24 1869.73
95. RPS17 ENSGALG00000002157 211.05 1859.25 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
96. HNRNPDL ENSGALG00000023199 201.57 1775.73 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
97. RPL31 ENSGALG00000016775 200.38 1765.25 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
98. SLC25A6_1 ENSGALG00000016691 196.82 1733.89 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
99. HSPA8 ENSGALG00000006512 194.45 1713.01 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
100. EIF4G2 ENSGALG00000005587 193.27 1702.61 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA