Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s92.

Sample reads: 113,367. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4056.57 35784.89
2. EEF1A EEF1A 1366.33 12053.03
3. gga-mir-3533 ENSGALG00000027736 1311.43 11568.73 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
4. MT-ATP6 MT-ATP6 1174.17 10357.90
5. MT-ND5 MT-ND5 987.00 8706.78
6. CIRBP ENSGALG00000030918 963.29 8497.63 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
7. RPL35A ENSGALG00000007611, ENSGALG00000041230 874.70 7716.13 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
8. RPL23A ENSGALG00000003966 809.82 7143.80 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
9. RPS10 ENSGALG00000002813 788.60 6956.61 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
10. RPLP1 ENSGALG00000030878 754.91 6659.41 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
11. RPLP0 ENSGALG00000023294 731.20 6450.25 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
12. MDK ENSGALG00000008367 703.75 6208.11 midkine [Source:NCBI gene;Acc:423196]
13. GAPDH ENSGALG00000014442 683.79 6032.03 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
14. RPL15 ENSGALG00000011290 623.90 5503.71 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
15. RPL4 ENSGALG00000007711 615.16 5426.61 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
16. PPIA ENSGALG00000028600 519.08 4579.05 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
17. RPS23 ENSGALG00000015617 511.59 4512.97 ribosomal protein S23
18. RPL38 ENSGALG00000001465 495.37 4369.89 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
19. RPL19 ENSGALG00000001658 494.12 4358.86 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
20. MT-CYB MT-CYB 486.64 4292.88
21. RPL27A ENSGALG00000005948 480.40 4237.83 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
22. RPS21 ENSGALG00000005338 477.90 4215.78 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
23. RPL26 RPL26 470.42 4149.79
24. RPL27 ENSGALG00000002837 466.67 4116.71 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
25. MT-ND4 MT-ND4 461.68 4072.69
26. RPSA 447.96 3951.66 ribosomal protein SA
27. SNRPD1 ENSGALG00000041334 446.71 3940.64 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
28. RPL29 ENSGALG00000026978 445.46 3929.61 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
29. RPL7A ENSGALG00000003197 445.46 3929.61 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
30. gga-mir-3527 gga-mir-3527 437.97 3863.54
31. RPS8 ENSGALG00000010124 431.74 3808.58 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
32. HMGN5 ENSGALG00000007131 423.00 3731.48 high mobility group nucleosome binding domain 5, transcript variant X1
33. RPL13 ENSGALG00000006179 405.53 3577.37 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
34. RPS29 ENSGALG00000012229 405.53 3577.37 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
35. NME2 ENSGALG00000002932 394.30 3478.30 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
36. RPL12 ENSGALG00000008806 390.56 3445.31 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
37. RPS15A ENSGALG00000006771 390.56 3445.31 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
38. RPS11 ENSGALG00000017299 386.81 3412.23 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
39. RPS4 RPS4 384.32 3390.27
40. ANP32B ENSGALG00000037483 381.82 3368.21 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
41. RPS2 ENSGALG00000005490 381.82 3368.21 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
42. RPS3A ENSGALG00000010077 376.83 3324.19 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
43. RPS16 ENSGALG00000026490 375.58 3313.17 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
44. RPS6 ENSGALG00000015082 374.34 3302.23 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
45. GNB2L1 ENSGALG00000000122 363.11 3203.16 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
46. RPS15 ENSGALG00000015195 361.86 3192.13 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
47. RPS12 ENSGALG00000013990 360.61 3181.11 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
48. RPL8 ENSGALG00000016232 355.62 3137.09 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
49. MT-CO1 MT-CO1 353.12 3115.04
50. RPL36 ENSGALG00000000474 351.88 3104.10 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
51. TXN ENSGALG00000015704 350.63 3093.07 thioredoxin [Source:NCBI gene;Acc:396437]
52. RPS27A ENSGALG00000036790 346.89 3060.08 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
53. PHB2 ENSGALG00000014567 339.40 2994.00 prohibitin 2 [Source:NCBI gene;Acc:771124]
54. RPL35 ENSGALG00000035677 331.91 2927.93 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
55. RPS28 ENSGALG00000024398 323.18 2850.92 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
56. RPL21 ENSGALG00000027035 315.69 2784.85 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
57. RPL23 ENSGALG00000001634 313.20 2762.88 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
58. TMSB4X ENSGALG00000026383 309.45 2729.80 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
59. RPL37 ENSGALG00000014833 306.96 2707.84 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
60. RPS14 ENSGALG00000004588 304.46 2685.78 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
61. RPL32 ENSGALG00000027142 303.21 2674.76 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
62. RPL24 ENSGALG00000015339 299.47 2641.76 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
63. TCEB3 ENSGALG00000034625 283.25 2498.68 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
64. ENSGALG00000028649 ENSGALG00000028649 282.00 2487.65
65. ALDOC ENSGALG00000026077 280.75 2476.63 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
66. FKBP4 ENSGALG00000014331 272.02 2399.61 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
67. RPL18A 270.77 2388.59 ribosomal protein L18a
68. AKAP12 ENSGALG00000036240 268.27 2366.53 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
69. RPL6 ENSGALG00000004818 265.78 2344.57 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
70. MT-ND3 MT-ND3 262.04 2311.58
71. RPS7 ENSGALG00000016392 255.80 2256.53 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
72. EIF5A2 ENSGALG00000009309 252.05 2223.45 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
73. SET ENSGALG00000004701 252.05 2223.45 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
74. RPL14 ENSGALG00000043379 249.56 2201.48 ribosomal protein L14
75. UBB ENSGALG00000004509 249.56 2201.48 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
76. ENO1 ENSGALG00000002377 240.82 2124.38 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
77. RPLP2 ENSGALG00000034811 235.83 2080.37 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
78. ATP5G3 234.58 2069.34 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
79. STMN1 ENSGALG00000001475 232.09 2047.37 stathmin 1 [Source:NCBI gene;Acc:396057]
80. ENSGALG00000018384 ENSGALG00000018384 230.84 2036.35
81. RPS20 ENSGALG00000014432 228.35 2014.38 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
82. H3-IX H3-IX 227.10 2003.35
83. HSPA8 ENSGALG00000006512 227.10 2003.35 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
84. RPL7 ENSGALG00000035252 224.60 1981.30 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
85. PRDX1 ENSGALG00000010243 223.35 1970.27 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
86. ENSGALG00000002696 ENSGALG00000002696 220.86 1948.31
87. RPS13 ENSGALG00000006096 217.12 1915.32 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
88. RPS25 ENSGALG00000007699 214.62 1893.26 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
89. SEC61G ENSGALG00000037863 214.62 1893.26 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
90. MT-ND1 MT-ND1 209.63 1849.24
91. RPL5 ENSGALG00000005922 207.13 1827.19 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
92. RPL10A ENSGALG00000002644 203.39 1794.20 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
93. RPS17 ENSGALG00000002157 202.14 1783.17 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
94. CRHOA CRHOA 200.89 1772.14
95. HNRNPDL ENSGALG00000023199 197.15 1739.15 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
96. RPL31 ENSGALG00000016775 193.41 1706.16 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
97. RPL36AL ENSGALG00000004952 190.91 1684.11 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
98. RPL37A ENSGALG00000011472 189.66 1673.08 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
99. NDUFB9 ENSGALG00000042242 184.67 1629.06 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
100. SLC25A6_1 ENSGALG00000016691 184.67 1629.06 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA