Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s79.

Sample reads: 113,173. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4858.00 42927.47
2. EEF1A EEF1A 1173.26 10367.45
3. MT-ATP6 MT-ATP6 1056.56 9336.24
4. RPL35A ENSGALG00000007611, ENSGALG00000041230 941.41 8318.72 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
5. MT-ND5 MT-ND5 871.39 7699.99
6. GAPDH ENSGALG00000014442 806.81 7129.34 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
7. CIRBP ENSGALG00000030918 795.14 7026.21 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
8. RPS10 ENSGALG00000002813 718.12 6345.63 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
9. gga-mir-3533 ENSGALG00000027736 700.22 6187.46 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. RPLP0 ENSGALG00000023294 679.22 6001.89 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
11. RPL23A ENSGALG00000003966 670.66 5926.25 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
12. RPLP1 ENSGALG00000030878 658.21 5816.24 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
13. MDK ENSGALG00000008367 643.43 5685.64 midkine [Source:NCBI gene;Acc:423196]
14. RPL15 ENSGALG00000011290 583.52 5156.25 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
15. RPL4 ENSGALG00000007711 581.19 5135.66 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
16. RPL27A ENSGALG00000005948 515.05 4551.21 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
17. SNRPD1 ENSGALG00000041334 495.60 4379.34 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
18. RPL26 RPL26 494.82 4372.45
19. RPS8 ENSGALG00000010124 489.38 4324.38 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
20. RPS23 ENSGALG00000015617 480.82 4248.74 ribosomal protein S23
21. RPL19 ENSGALG00000001658 477.71 4221.26 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
22. PPIA ENSGALG00000028600 462.93 4090.66 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
23. RPS29 ENSGALG00000012229 461.37 4076.87 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
24. RPS21 ENSGALG00000005338 444.25 3925.59 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
25. RPS12 ENSGALG00000013990 441.92 3905.00 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
26. RPL8 ENSGALG00000016232 438.81 3877.52 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
27. RPS6 ENSGALG00000015082 418.58 3698.76 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
28. RPL13 ENSGALG00000006179 417.80 3691.87 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
29. RPSA 417.02 3684.98 ribosomal protein SA
30. RPS15A ENSGALG00000006771 401.46 3547.48 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
31. RPL7A ENSGALG00000003197 397.57 3513.11 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
32. RPS3A ENSGALG00000010077 396.02 3499.41 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
33. RPL29 ENSGALG00000026978 395.24 3492.52 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
34. HMGN5 ENSGALG00000007131 392.13 3465.04 high mobility group nucleosome binding domain 5, transcript variant X1
35. MT-CO1 MT-CO1 383.57 3389.40
36. RPL38 ENSGALG00000001465 383.57 3389.40 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
37. MT-ND4 MT-ND4 381.23 3368.72
38. RPL27 ENSGALG00000002837 378.90 3348.13 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
39. gga-mir-3527 gga-mir-3527 378.12 3341.24
40. RPL37 ENSGALG00000014833 375.79 3320.65 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
41. MT-CYB MT-CYB 374.23 3306.86
42. RPS11 ENSGALG00000017299 371.12 3279.38 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
43. RPS16 ENSGALG00000026490 371.12 3279.38 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
44. RPS2 ENSGALG00000005490 359.45 3176.26 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
45. ENSGALG00000028649 ENSGALG00000028649 351.67 3107.51
46. RPL12 ENSGALG00000008806 350.89 3100.62 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
47. NME2 ENSGALG00000002932 345.44 3052.46 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
48. RPL35 ENSGALG00000035677 340.00 3004.39 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
49. ENSGALG00000018384 ENSGALG00000018384 338.44 2990.61
50. PHB2 ENSGALG00000014567 334.55 2956.23 prohibitin 2 [Source:NCBI gene;Acc:771124]
51. RPL32 ENSGALG00000027142 334.55 2956.23 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
52. RPL36 ENSGALG00000000474 333.77 2949.34 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
53. RPS15 ENSGALG00000015195 328.33 2901.27 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
54. RPS4 RPS4 325.99 2880.59
55. RPL21 ENSGALG00000027035 311.99 2756.88 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
56. RPS27A ENSGALG00000036790 308.88 2729.40 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
57. RPS28 ENSGALG00000024398 305.76 2701.83 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
58. RPS7 ENSGALG00000016392 303.43 2681.24 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
59. TXN ENSGALG00000015704 289.43 2557.53 thioredoxin [Source:NCBI gene;Acc:396437]
60. RPS14 ENSGALG00000004588 281.65 2488.79 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
61. RPL24 ENSGALG00000015339 279.31 2468.11 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
62. ANP32B ENSGALG00000037483 278.53 2461.22 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
63. GNB2L1 ENSGALG00000000122 276.98 2447.52 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
64. HBG1 HBG1 271.53 2399.36
65. ENO1 ENSGALG00000002377 260.64 2303.13 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
66. RPL23 ENSGALG00000001634 259.08 2289.35 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
67. RPL6 ENSGALG00000004818 257.53 2275.65 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
68. SET ENSGALG00000004701 254.41 2248.08 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
69. RPL14 ENSGALG00000043379 252.08 2227.49 ribosomal protein L14
70. UBB ENSGALG00000004509 246.63 2179.33 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
71. HBZ ENSGALG00000023740 242.74 2144.96 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
72. TCEB3 ENSGALG00000034625 237.30 2096.89 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
73. ALDOC ENSGALG00000026077 236.52 2090.00 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
74. ATP5G3 232.63 2055.62 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
75. ENSGALG00000002696 ENSGALG00000002696 232.63 2055.62
76. LDHB ENSGALG00000035836 231.85 2048.73 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
77. RPL18A 231.07 2041.84 ribosomal protein L18a
78. MT-ND3 MT-ND3 227.18 2007.46
79. RPS20 ENSGALG00000014432 226.41 2000.66 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
80. RPL36AL ENSGALG00000004952 225.63 1993.77 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
81. EIF5A2 ENSGALG00000009309 224.07 1979.98 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
82. RPL7 ENSGALG00000035252 224.07 1979.98 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
83. FKBP4 ENSGALG00000014331 218.63 1931.91 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
84. CRHOA CRHOA 216.29 1911.24
85. RPS25 ENSGALG00000007699 214.74 1897.54 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
86. PRDX1 ENSGALG00000010243 213.96 1890.65 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
87. ACTC1 ENSGALG00000009844 206.18 1821.90 actin, alpha, cardiac muscle 1 [Source:NCBI gene;Acc:423298]
88. STMN1 ENSGALG00000001475 205.40 1815.01 stathmin 1 [Source:NCBI gene;Acc:396057]
89. AKAP12 ENSGALG00000036240 204.62 1808.11 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
90. SLC25A6_1 ENSGALG00000016691 204.62 1808.11 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
91. RPS13 ENSGALG00000006096 200.73 1773.74 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
92. EEF1D 197.62 1746.26 eukaryotic translation elongation factor 1 delta, transcript variant X13
93. RPLP2 ENSGALG00000034811 197.62 1746.26 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
94. RPL10A ENSGALG00000002644 196.06 1732.47 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
95. H3-IX H3-IX 192.95 1704.99
96. PNRC1 ENSGALG00000015780 192.17 1698.10 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
97. TMSB4X ENSGALG00000026383 191.39 1691.21 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
98. NUCKS1 ENSGALG00000000708 190.62 1684.40 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
99. RPL5 ENSGALG00000005922 189.84 1677.51 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
100. HBE 187.50 1656.83 hemoglobin subunit epsilon
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA