Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s72.

Sample reads: 113,448. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3843.23 33877.36
2. MT-ATP6 MT-ATP6 1070.64 9437.49
3. EEF1A EEF1A 1050.03 9255.82
4. MT-ND5 MT-ND5 1001.76 8830.33
5. CIRBP ENSGALG00000030918 1001.21 8825.48 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
6. gga-mir-3533 ENSGALG00000027736 862.91 7606.39 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. RPL23A ENSGALG00000003966 850.98 7501.23 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
8. RPL35A ENSGALG00000007611, ENSGALG00000041230 773.42 6817.55 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
9. RPLP0 ENSGALG00000023294 751.18 6621.51 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
10. RPS10 ENSGALG00000002813 733.83 6468.57 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
11. RPLP1 ENSGALG00000030878 698.57 6157.76 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
12. MDK ENSGALG00000008367 665.49 5866.17 midkine [Source:NCBI gene;Acc:423196]
13. GAPDH ENSGALG00000014442 662.78 5842.28 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
14. RPL15 ENSGALG00000011290 653.01 5756.16 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
15. RPS23 ENSGALG00000015617 623.72 5497.98 ribosomal protein S23
16. RPL4 ENSGALG00000007711 583.59 5144.24 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
17. HBG1 HBG1 516.88 4556.20
18. RPS21 ENSGALG00000005338 484.88 4274.13 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
19. MT-CYB MT-CYB 478.37 4216.74
20. gga-mir-3527 gga-mir-3527 472.40 4164.12
21. MT-ND4 MT-ND4 471.32 4154.60
22. RPL13 ENSGALG00000006179 469.15 4135.47 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
23. RPSA 454.51 4006.42 ribosomal protein SA
24. RPL27A ENSGALG00000005948 446.91 3939.43 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
25. RPS8 ENSGALG00000010124 443.12 3906.02 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
26. HBZ ENSGALG00000023740 441.49 3891.65 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
27. RPL19 ENSGALG00000001658 437.69 3858.16 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
28. SNRPD1 ENSGALG00000041334 437.69 3858.16 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
29. RPL7A ENSGALG00000003197 432.81 3815.14 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
30. RPS15A ENSGALG00000006771 419.79 3700.37 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
31. RPS6 ENSGALG00000015082 412.74 3638.23 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
32. RPS11 ENSGALG00000017299 402.98 3552.19 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
33. RPL29 ENSGALG00000026978 400.27 3528.31 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
34. RPL26 RPL26 397.56 3504.42
35. RPL27 ENSGALG00000002837 396.47 3494.81 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
36. PPIA ENSGALG00000028600 394.30 3475.68 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
37. RPS29 ENSGALG00000012229 391.59 3451.79 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
38. RPS2 ENSGALG00000005490 387.25 3413.54 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
39. RPS12 ENSGALG00000013990 386.17 3404.02 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
40. RPL35 ENSGALG00000035677 382.91 3375.28 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
41. RPS4 RPS4 382.91 3375.28
42. RPL37 ENSGALG00000014833 381.83 3365.76 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
43. RPL38 ENSGALG00000001465 381.83 3365.76 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
44. RPL8 ENSGALG00000016232 381.83 3365.76 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
45. RPS15 ENSGALG00000015195 366.10 3227.10 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
46. GNB2L1 ENSGALG00000000122 359.59 3169.72 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
47. RPS3A ENSGALG00000010077 359.59 3169.72 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
48. HBE 357.96 3155.35 hemoglobin subunit epsilon
49. NME2 ENSGALG00000002932 353.08 3112.33 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
50. RPL32 ENSGALG00000027142 343.86 3031.06 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
51. HMGN5 ENSGALG00000007131 341.15 3007.17 high mobility group nucleosome binding domain 5, transcript variant X1
52. RPL37A ENSGALG00000011472 337.35 2973.68 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
53. RPL36 ENSGALG00000000474 336.81 2968.92 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
54. RPL14 ENSGALG00000043379 335.73 2959.40 ribosomal protein L14
55. PHB2 ENSGALG00000014567 327.05 2882.88 prohibitin 2 [Source:NCBI gene;Acc:771124]
56. RPL12 ENSGALG00000008806 324.88 2863.76 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
57. TXN ENSGALG00000015704 321.62 2835.02 thioredoxin [Source:NCBI gene;Acc:396437]
58. RPS27A ENSGALG00000036790 317.29 2796.85 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
59. RPS16 ENSGALG00000026490 316.20 2787.24 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
60. MT-CO1 MT-CO1 306.98 2705.97
61. ANP32B ENSGALG00000037483 301.56 2658.20 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
62. RPL21 ENSGALG00000027035 298.85 2634.31 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
63. RPS28 ENSGALG00000024398 296.68 2615.18 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
64. ALDOC ENSGALG00000026077 294.51 2596.05 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
65. RPL6 ENSGALG00000004818 293.42 2586.44 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
66. RPL23 ENSGALG00000001634 290.17 2557.79 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
67. RPL18A 285.29 2514.78 ribosomal protein L18a
68. TCEB3 ENSGALG00000034625 279.32 2462.15 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
69. TMSB4X ENSGALG00000026383 267.39 2356.99 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
70. CRHOA CRHOA 264.68 2333.10
71. EIF5A2 ENSGALG00000009309 264.13 2328.26 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
72. MT-ND3 MT-ND3 261.42 2304.37
73. RPS14 ENSGALG00000004588 261.42 2304.37 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
74. SET ENSGALG00000004701 259.79 2290.00 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
75. ENSGALG00000028649 ENSGALG00000028649 257.63 2270.96
76. ATP5G3 256.54 2261.35 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
77. RPS7 ENSGALG00000016392 249.49 2199.21 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
78. RPL5 ENSGALG00000005922 241.35 2127.46 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
79. RPL24 ENSGALG00000015339 240.27 2117.94 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
80. RPL36AL ENSGALG00000004952 237.02 2089.29 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
81. MT-ND1 MT-ND1 235.93 2079.68
82. LDHB ENSGALG00000035836 228.34 2012.77 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
83. RPS20 ENSGALG00000014432 227.80 2008.01 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
84. RPLP2 ENSGALG00000034811 227.25 2003.17 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
85. FKBP4 ENSGALG00000014331 225.08 1984.04 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
86. ENO1 ENSGALG00000002377 223.46 1969.76 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
87. RAN ENSGALG00000002569 223.46 1969.76 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
88. MYH15 ENSGALG00000015358 221.29 1950.63 myosin, heavy chain 15 [Source:NCBI gene;Acc:395534]
89. ACTC1 ENSGALG00000009844 215.32 1898.01 actin, alpha, cardiac muscle 1 [Source:NCBI gene;Acc:423298]
90. RPS13 ENSGALG00000006096 214.24 1888.49 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
91. STMN1 ENSGALG00000001475 213.69 1883.64 stathmin 1 [Source:NCBI gene;Acc:396057]
92. ENSGALG00000002696 ENSGALG00000002696 213.15 1878.88
93. EEF1D 211.52 1864.51 eukaryotic translation elongation factor 1 delta, transcript variant X13
94. RPL7 ENSGALG00000035252 211.52 1864.51 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
95. SLC25A6_1 ENSGALG00000016691 208.27 1835.86 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
96. PRDX1 ENSGALG00000010243 203.39 1792.84 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
97. ENSGALG00000018384 ENSGALG00000018384 202.30 1783.24
98. AKAP12 ENSGALG00000036240 201.22 1773.72 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
99. MYL3 ENSGALG00000005448 201.22 1773.72 myosin, light chain 3, alkali; ventricular, skeletal, slow [Source:NCBI gene;Acc:396067]
100. EIF4G2 ENSGALG00000005587 198.51 1749.83 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA