Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s68.

Sample reads: 113,522. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4266.25 37583.10
2. EEF1A EEF1A 1145.79 10093.72
3. MT-ATP6 MT-ATP6 1074.00 9461.29
4. CIRBP ENSGALG00000030918 1047.55 9228.29 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
5. gga-mir-3533 ENSGALG00000027736 972.46 8566.79 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
6. RPL35A ENSGALG00000007611, ENSGALG00000041230 830.30 7314.44 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
7. HBG1 HBG1 787.32 6935.82
8. MT-ND5 MT-ND5 763.23 6723.60
9. GAPDH ENSGALG00000014442 743.87 6553.05 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
10. RPL15 ENSGALG00000011290 733.00 6457.29 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
11. RPLP1 ENSGALG00000030878 707.97 6236.79 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
12. RPL23A ENSGALG00000003966 700.89 6174.42 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
13. RPLP0 ENSGALG00000023294 690.02 6078.66 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
14. RPS10 ENSGALG00000002813 678.22 5974.71 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
15. RPS23 ENSGALG00000015617 677.27 5966.34 ribosomal protein S23
16. RPL4 ENSGALG00000007711 551.17 4855.48 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
17. MDK ENSGALG00000008367 532.28 4689.07 midkine [Source:NCBI gene;Acc:423196]
18. RPS11 ENSGALG00000017299 493.08 4343.74 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
19. RPL13 ENSGALG00000006179 473.71 4173.10 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
20. SNRPD1 ENSGALG00000041334 466.16 4106.59 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
21. RPS21 ENSGALG00000005338 464.27 4089.94 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
22. RPL19 ENSGALG00000001658 451.99 3981.76 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
23. RPL27A ENSGALG00000005948 442.54 3898.51 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
24. RPL29 ENSGALG00000026978 440.65 3881.86 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
25. RPS6 ENSGALG00000015082 439.71 3873.58 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
26. MT-CYB MT-CYB 433.57 3819.49
27. RPS2 ENSGALG00000005490 431.21 3798.70 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
28. RPS15A ENSGALG00000006771 423.65 3732.10 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
29. RPS8 ENSGALG00000010124 422.70 3723.73 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
30. RPL7A ENSGALG00000003197 419.40 3694.66 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
31. MT-ND4 MT-ND4 417.98 3682.15
32. RPS12 ENSGALG00000013990 411.37 3623.92 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
33. PPIA ENSGALG00000028600 410.43 3615.64 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
34. RPSA 409.48 3607.27 ribosomal protein SA
35. RPL35 ENSGALG00000035677 405.70 3573.97 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
36. gga-mir-3527 gga-mir-3527 405.70 3573.97
37. RPL26 RPL26 397.20 3499.09
38. GNB2L1 ENSGALG00000000122 392.48 3457.51 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
39. RPS29 ENSGALG00000012229 383.98 3382.63 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
40. RPL8 ENSGALG00000016232 377.36 3324.31 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
41. RPL38 ENSGALG00000001465 375.00 3303.52 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
42. RPL21 ENSGALG00000027035 373.11 3286.87 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
43. RPL32 ENSGALG00000027142 370.75 3266.08 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
44. RPS3A ENSGALG00000010077 366.50 3228.64 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
45. HMGN5 ENSGALG00000007131 361.78 3187.06 high mobility group nucleosome binding domain 5, transcript variant X1
46. RPS16 ENSGALG00000026490 349.50 3078.88 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
47. RPL37 ENSGALG00000014833 348.08 3066.38 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
48. RPL27 ENSGALG00000002837 347.61 3062.23 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
49. RPS27A ENSGALG00000036790 345.72 3045.59 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
50. HBZ ENSGALG00000023740 342.41 3016.43 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
51. RPS15 ENSGALG00000015195 338.16 2978.99 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
52. HBE 335.33 2954.06 hemoglobin subunit epsilon
53. RPS4 RPS4 329.66 2904.11
54. MT-CO1 MT-CO1 323.05 2845.88
55. RPL37A ENSGALG00000011472 315.97 2783.51 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
56. RPL12 ENSGALG00000008806 315.02 2775.14 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
57. RPL36 ENSGALG00000000474 313.60 2762.63 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
58. NME2 ENSGALG00000002932 311.24 2741.84 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
59. TXN ENSGALG00000015704 306.05 2696.12 thioredoxin [Source:NCBI gene;Acc:396437]
60. ANP32B ENSGALG00000037483 303.69 2675.33 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
61. PHB2 ENSGALG00000014567 298.02 2625.38 prohibitin 2 [Source:NCBI gene;Acc:771124]
62. LDHB ENSGALG00000035836 289.05 2546.36 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
63. RPS28 ENSGALG00000024398 289.05 2546.36 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
64. ENSGALG00000028649 ENSGALG00000028649 282.43 2488.04
65. RPL18A 281.96 2483.90 ribosomal protein L18a
66. MT-ND3 MT-ND3 281.02 2475.62
67. RPS14 ENSGALG00000004588 275.82 2429.81 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
68. TCEB3 ENSGALG00000034625 274.88 2421.53 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
69. EIF5A2 ENSGALG00000009309 270.15 2379.86 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
70. RPL6 ENSGALG00000004818 268.74 2367.44 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
71. RPL36AL ENSGALG00000004952 266.85 2350.79 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
72. RPS20 ENSGALG00000014432 259.29 2284.19 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
73. TMSB4X ENSGALG00000026383 258.35 2275.91 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
74. RPL14 ENSGALG00000043379 254.57 2242.61 ribosomal protein L14
75. RPL24 ENSGALG00000015339 252.68 2225.96 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
76. SET ENSGALG00000004701 251.73 2217.59 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
77. RPL23 ENSGALG00000001634 251.26 2213.45 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
78. ATP5G3 246.54 2171.87 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
79. RPS7 ENSGALG00000016392 241.34 2126.06 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
80. ALDOC ENSGALG00000026077 239.93 2113.64 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
81. MT-ND1 MT-ND1 239.45 2109.41
82. SLC25A6_1 ENSGALG00000016691 235.68 2076.20 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
83. CRHOA CRHOA 223.87 1972.16
84. UBB ENSGALG00000004509 222.45 1959.65 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
85. HNRNPDL ENSGALG00000023199 221.98 1955.51 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
86. H3-IX H3-IX 221.51 1951.37
87. STMN1 ENSGALG00000001475 219.62 1934.72 stathmin 1 [Source:NCBI gene;Acc:396057]
88. PRDX1 ENSGALG00000010243 218.20 1922.21 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
89. FKBP4 ENSGALG00000014331 215.37 1897.28 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
90. RPS13 ENSGALG00000006096 214.89 1893.05 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
91. ENO1 ENSGALG00000002377 213.01 1876.49 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
92. RPL7 ENSGALG00000035252 213.01 1876.49 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
93. EEF1D 209.70 1847.33 eukaryotic translation elongation factor 1 delta, transcript variant X13
94. EIF4G2 ENSGALG00000005587 209.70 1847.33 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
95. RPLP2 ENSGALG00000034811 200.73 1768.31 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
96. ACTC1 ENSGALG00000009844 196.48 1730.87 actin, alpha, cardiac muscle 1 [Source:NCBI gene;Acc:423298]
97. MYH15 ENSGALG00000015358 196.48 1730.87 myosin, heavy chain 15 [Source:NCBI gene;Acc:395534]
98. RPL5 ENSGALG00000005922 196.00 1726.64 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
99. ENSGALG00000028992 ENSGALG00000028992 193.64 1705.85
100. RAN ENSGALG00000002569 192.22 1693.34 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA