Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s67.

Sample reads: 113,229. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3989.69 35236.77
2. MT-ATP6 MT-ATP6 1181.52 10435.13
3. EEF1A EEF1A 1072.52 9472.45
4. RPL35A ENSGALG00000007611, ENSGALG00000041230 891.13 7870.42 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
5. CIRBP ENSGALG00000030918 880.31 7774.86 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
6. MT-ND5 MT-ND5 828.72 7319.22
7. gga-mir-3533 ENSGALG00000027736 787.12 6951.81 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. RPL23A ENSGALG00000003966 780.47 6893.08 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
9. GAPDH ENSGALG00000014442 742.19 6554.99 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
10. RPS10 ENSGALG00000002813 728.88 6437.44 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
11. RPL15 ENSGALG00000011290 704.75 6224.32 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
12. RPLP0 ENSGALG00000023294 697.26 6158.17 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
13. RPLP1 ENSGALG00000030878 649.00 5731.94 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
14. RPL4 ENSGALG00000007711 563.30 4975.04 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
15. MDK ENSGALG00000008367 526.69 4651.70 midkine [Source:NCBI gene;Acc:423196]
16. RPS23 ENSGALG00000015617 517.54 4570.89 ribosomal protein S23
17. RPL27A ENSGALG00000005948 480.93 4247.55 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
18. HMGN5 ENSGALG00000007131 476.77 4210.81 high mobility group nucleosome binding domain 5, transcript variant X1
19. SNRPD1 ENSGALG00000041334 472.61 4174.07 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
20. PPIA ENSGALG00000028600 465.95 4115.25 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
21. RPL19 ENSGALG00000001658 450.14 3975.62 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
22. RPS29 ENSGALG00000012229 440.16 3887.47 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
23. RPS21 ENSGALG00000005338 438.49 3872.72 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
24. RPSA 425.18 3755.17 ribosomal protein SA
25. RPL13 ENSGALG00000006179 420.19 3711.10 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
26. RPS11 ENSGALG00000017299 412.70 3644.95 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
27. MT-ND4 MT-ND4 408.54 3608.21
28. MT-CYB MT-CYB 406.87 3593.46
29. RPL32 ENSGALG00000027142 406.87 3593.46 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
30. RPS15A ENSGALG00000006771 406.87 3593.46 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
31. RPS2 ENSGALG00000005490 404.38 3571.47 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
32. RPL21 ENSGALG00000027035 399.39 3527.40 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
33. gga-mir-3527 gga-mir-3527 396.89 3505.32
34. RPL7A ENSGALG00000003197 389.40 3439.16 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
35. RPL26 RPL26 378.58 3343.60
36. RPL8 ENSGALG00000016232 361.11 3189.31 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
37. RPS8 ENSGALG00000010124 357.78 3159.90 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
38. RPL29 ENSGALG00000026978 356.95 3152.57 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
39. RPS3A ENSGALG00000010077 354.45 3130.49 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
40. GNB2L1 ENSGALG00000000122 352.79 3115.83 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
41. RPS15 ENSGALG00000015195 352.79 3115.83 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
42. PHB2 ENSGALG00000014567 344.47 3042.34 prohibitin 2 [Source:NCBI gene;Acc:771124]
43. RPL38 ENSGALG00000001465 338.65 2990.94 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
44. RPS16 ENSGALG00000026490 337.81 2983.52 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
45. RPS28 ENSGALG00000024398 331.99 2932.12 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
46. RPL27 ENSGALG00000002837 329.49 2910.04 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
47. TXN ENSGALG00000015704 327.00 2888.05 thioredoxin [Source:NCBI gene;Acc:396437]
48. NME2 ENSGALG00000002932 326.16 2880.63 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
49. RPL35 ENSGALG00000035677 317.01 2799.82 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
50. RPL12 ENSGALG00000008806 313.68 2770.41 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
51. RPS4 RPS4 313.68 2770.41
52. RPS12 ENSGALG00000013990 310.36 2741.09 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
53. HBG1 HBG1 304.53 2689.60
54. RPL37 ENSGALG00000014833 302.04 2667.60 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
55. ANP32B ENSGALG00000037483 301.20 2660.19 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
56. RPL6 ENSGALG00000004818 301.20 2660.19 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
57. MT-CO1 MT-CO1 297.87 2630.78
58. RPS6 ENSGALG00000015082 297.87 2630.78 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
59. MT-ND3 MT-ND3 288.72 2549.96
60. RPL23 ENSGALG00000001634 287.06 2535.30 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
61. RPL36 ENSGALG00000000474 285.39 2520.55 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
62. LDHB ENSGALG00000035836 272.08 2403.00 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
63. NCL ENSGALG00000032930 270.42 2388.34 nucleolin [Source:NCBI gene;Acc:396201]
64. RPS14 ENSGALG00000004588 270.42 2388.34 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
65. RPL14 ENSGALG00000043379 266.26 2351.60 ribosomal protein L14
66. RPS27A ENSGALG00000036790 266.26 2351.60 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
67. ENSGALG00000028649 ENSGALG00000028649 262.10 2314.86
68. SET ENSGALG00000004701 259.60 2292.78 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
69. RPL24 ENSGALG00000015339 254.61 2248.70 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
70. RPL37A ENSGALG00000011472 253.78 2241.37 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
71. RPS7 ENSGALG00000016392 248.78 2197.21 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
72. ALDOC ENSGALG00000026077 242.96 2145.81 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
73. RPL7 ENSGALG00000035252 242.13 2138.48 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
74. ATP5G3 239.63 2116.40 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
75. HBZ ENSGALG00000023740 239.63 2116.40 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
76. TCEB3 ENSGALG00000034625 238.80 2109.07 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
77. ENSGALG00000002696 ENSGALG00000002696 237.97 2101.74
78. RPL18A 234.64 2072.33 ribosomal protein L18a
79. AKAP12 ENSGALG00000036240 233.81 2065.00 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
80. HBE 226.32 1998.85 hemoglobin subunit epsilon
81. SLC25A6_1 ENSGALG00000016691 223.82 1976.77 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
82. UBB ENSGALG00000004509 223.82 1976.77 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
83. EIF5A2 ENSGALG00000009309 222.16 1962.11 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
84. PRDX1 ENSGALG00000010243 218.83 1932.70 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
85. FKBP4 ENSGALG00000014331 217.17 1918.04 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
86. STMN1 ENSGALG00000001475 213.84 1888.63 stathmin 1 [Source:NCBI gene;Acc:396057]
87. ENO1 ENSGALG00000002377 212.17 1873.88 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
88. MYH15 ENSGALG00000015358 212.17 1873.88 myosin, heavy chain 15 [Source:NCBI gene;Acc:395534]
89. ACTC1 ENSGALG00000009844 207.18 1829.80 actin, alpha, cardiac muscle 1 [Source:NCBI gene;Acc:423298]
90. RPS20 ENSGALG00000014432 201.36 1778.40 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
91. NUCKS1 ENSGALG00000000708 199.69 1763.65 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
92. RPS13 ENSGALG00000006096 197.20 1741.66 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
93. RAN ENSGALG00000002569 193.87 1712.25 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
94. EEF1D 190.54 1682.84 eukaryotic translation elongation factor 1 delta, transcript variant X13
95. RPL5 ENSGALG00000005922 190.54 1682.84 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
96. RPS17 ENSGALG00000002157 190.54 1682.84 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
97. ENSGALG00000018384 ENSGALG00000018384 189.71 1675.51
98. HSPA8 ENSGALG00000006512 189.71 1675.51 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
99. CRHOA CRHOA 188.88 1668.18
100. RPL36AL ENSGALG00000004952 187.21 1653.43 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA