Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s63.

Sample reads: 113,376. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4380.71 38639.32
2. EEF1A EEF1A 1470.18 12967.48
3. CIRBP ENSGALG00000030918 948.90 8369.61 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
4. RPL35A ENSGALG00000007611, ENSGALG00000041230 943.93 8325.78 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
5. gga-mir-3533 ENSGALG00000027736 914.10 8062.67 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
6. MT-ATP6 MT-ATP6 901.67 7953.03
7. RPL23A ENSGALG00000003966 856.91 7558.23 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
8. RPL15 ENSGALG00000011290 729.29 6432.58 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
9. RPLP1 ENSGALG00000030878 701.94 6191.34 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
10. RPLP0 ENSGALG00000023294 701.11 6184.02 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
11. RPS10 ENSGALG00000002813 693.65 6118.22 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
12. RPL4 ENSGALG00000007711 641.44 5657.71 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
13. GAPDH ENSGALG00000014442 581.77 5131.40 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
14. MT-ND5 MT-ND5 562.71 4963.29
15. RPS23 ENSGALG00000015617 514.65 4539.38 ribosomal protein S23
16. RPL27A ENSGALG00000005948 510.50 4502.78 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
17. MDK ENSGALG00000008367 503.87 4444.30 midkine [Source:NCBI gene;Acc:423196]
18. SNRPD1 ENSGALG00000041334 498.90 4400.46 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
19. HMGN5 ENSGALG00000007131 492.27 4341.98 high mobility group nucleosome binding domain 5, transcript variant X1
20. RPS8 ENSGALG00000010124 474.87 4188.51 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
21. RPS21 ENSGALG00000005338 462.44 4078.87 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
22. RPL13 ENSGALG00000006179 457.46 4034.95 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
23. RPL32 ENSGALG00000027142 453.32 3998.43 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
24. RPS11 ENSGALG00000017299 443.37 3910.67 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
25. RPL26 RPL26 440.89 3888.80
26. RPSA 433.43 3823.00 ribosomal protein SA
27. RPS6 ENSGALG00000015082 430.11 3793.71 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
28. RPL19 ENSGALG00000001658 426.80 3764.52 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
29. MT-ND4 MT-ND4 425.97 3757.20
30. RPS15A ENSGALG00000006771 414.37 3654.88 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
31. RPL12 ENSGALG00000008806 411.88 3632.92 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
32. RPL27 ENSGALG00000002837 409.40 3611.04 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
33. RPL38 ENSGALG00000001465 407.74 3596.40 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
34. RPS29 ENSGALG00000012229 399.45 3523.28 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
35. RPL7A ENSGALG00000003197 393.65 3472.12 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
36. RPL35 ENSGALG00000035677 386.19 3406.32 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
37. RPS12 ENSGALG00000013990 384.53 3391.68 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
38. RPS3A ENSGALG00000010077 382.05 3369.81 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
39. PPIA ENSGALG00000028600 376.25 3318.65 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
40. RPL29 ENSGALG00000026978 374.59 3304.01 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
41. RPS2 ENSGALG00000005490 372.93 3289.37 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
42. TXN ENSGALG00000015704 372.93 3289.37 thioredoxin [Source:NCBI gene;Acc:396437]
43. MT-CYB MT-CYB 372.10 3282.05
44. RPL21 ENSGALG00000027035 364.64 3216.25 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
45. RPL8 ENSGALG00000016232 362.99 3201.69 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
46. gga-mir-3527 gga-mir-3527 358.84 3165.09
47. RPS4 RPS4 354.70 3128.57
48. RPS15 ENSGALG00000015195 353.87 3121.25 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
49. RPS27A ENSGALG00000036790 353.87 3121.25 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
50. MT-CO1 MT-CO1 352.21 3106.61
51. RPS16 ENSGALG00000026490 347.24 3062.77 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
52. RPL37 ENSGALG00000014833 343.10 3026.26 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
53. RPL36 ENSGALG00000000474 333.15 2938.49 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
54. GNB2L1 ENSGALG00000000122 331.50 2923.94 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
55. NME2 ENSGALG00000002932 327.35 2887.34 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
56. ANP32B ENSGALG00000037483 324.87 2865.46 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
57. SET ENSGALG00000004701 316.58 2792.34 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
58. PHB2 ENSGALG00000014567 315.75 2785.02 prohibitin 2 [Source:NCBI gene;Acc:771124]
59. RPS28 ENSGALG00000024398 309.95 2733.86 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
60. RPL6 ENSGALG00000004818 295.03 2602.26 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
61. EIF5A2 ENSGALG00000009309 292.54 2580.30 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
62. RPS14 ENSGALG00000004588 290.89 2565.75 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
63. RPL14 ENSGALG00000043379 286.74 2529.14 ribosomal protein L14
64. LDHB ENSGALG00000035836 280.94 2477.98 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
65. RPL18A 273.48 2412.18 ribosomal protein L18a
66. HBG1 HBG1 261.05 2302.55
67. RPS20 ENSGALG00000014432 261.05 2302.55 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
68. ENSGALG00000002696 ENSGALG00000002696 259.39 2287.91
69. RAN ENSGALG00000002569 259.39 2287.91 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
70. RPL24 ENSGALG00000015339 256.91 2266.03 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
71. RPL23 ENSGALG00000001634 251.11 2214.87 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
72. RPL37A ENSGALG00000011472 247.79 2185.59 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
73. RPS7 ENSGALG00000016392 243.65 2149.07 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
74. ENSGALG00000028649 ENSGALG00000028649 242.82 2141.75
75. TCEB3 ENSGALG00000034625 241.99 2134.43 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
76. ENO1 ENSGALG00000002377 232.88 2054.08 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
77. CRHOA CRHOA 229.56 2024.80
78. NCL ENSGALG00000032930 228.73 2017.47 nucleolin [Source:NCBI gene;Acc:396201]
79. TMSB4X ENSGALG00000026383 227.90 2010.15 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
80. RPLP2 ENSGALG00000034811 225.42 1988.28 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
81. RPL36AL ENSGALG00000004952 221.27 1951.67 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
82. AKAP12 ENSGALG00000036240 220.44 1944.35 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
83. HBZ ENSGALG00000023740 219.62 1937.12 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
84. RPL5 ENSGALG00000005922 214.64 1893.20 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
85. H3-IX H3-IX 212.16 1871.32
86. HNRNPDL ENSGALG00000023199 212.16 1871.32 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
87. STMN1 ENSGALG00000001475 211.33 1864.00 stathmin 1 [Source:NCBI gene;Acc:396057]
88. RPL7 ENSGALG00000035252 208.84 1842.04 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
89. HSPA8 ENSGALG00000006512 207.18 1827.40 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
90. SLC25A6_1 ENSGALG00000016691 206.36 1820.16 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
91. ATP5G3 204.70 1805.52 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
92. MT-ND3 MT-ND3 202.21 1783.56
93. RPL10A ENSGALG00000002644 202.21 1783.56 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
94. RPS17 ENSGALG00000002157 201.38 1776.24 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
95. PRDX1 ENSGALG00000010243 200.55 1768.92 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
96. CCT4 ENSGALG00000008812 199.73 1761.68 chaperonin containing TCP1 subunit 4 [Source:NCBI gene;Acc:395414]
97. RPL31 ENSGALG00000016775 196.41 1732.40 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
98. ENSGALG00000028992 ENSGALG00000028992 189.78 1673.92
99. RPS13 ENSGALG00000006096 189.78 1673.92 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
100. NUCKS1 ENSGALG00000000708 188.95 1666.60 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA