Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s60.

Sample reads: 113,604. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4007.10 35275.24
2. EEF1A EEF1A 1250.83 11011.29
3. CIRBP ENSGALG00000030918 1067.23 9395.02 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
4. MT-ATP6 MT-ATP6 930.77 8193.74
5. gga-mir-3533 ENSGALG00000027736 929.11 8179.13 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
6. RPLP1 ENSGALG00000030878 914.69 8052.18 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
7. RPL35A ENSGALG00000007611, ENSGALG00000041230 863.10 7598.03 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
8. RPS10 ENSGALG00000002813 833.15 7334.37 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
9. RPL23A ENSGALG00000003966 769.91 6777.66 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
10. RPL15 ENSGALG00000011290 732.19 6445.60 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
11. MT-ND5 MT-ND5 675.06 5942.68
12. RPL4 ENSGALG00000007711 639.56 5630.16 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
13. RPS23 ENSGALG00000015617 629.02 5537.38 ribosomal protein S23
14. MDK ENSGALG00000008367 587.42 5171.17 midkine [Source:NCBI gene;Acc:423196]
15. GAPDH ENSGALG00000014442 574.66 5058.84 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
16. RPS11 ENSGALG00000017299 540.83 4761.03 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
17. RPS8 ENSGALG00000010124 536.39 4721.94 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
18. SNRPD1 ENSGALG00000041334 530.29 4668.24 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
19. RPLP0 ENSGALG00000023294 526.96 4638.93 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
20. RPS21 ENSGALG00000005338 525.85 4629.15 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
21. RPS6 ENSGALG00000015082 505.32 4448.43 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
22. RPL27A ENSGALG00000005948 496.45 4370.34 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
23. RPS15 ENSGALG00000015195 496.45 4370.34 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
24. RPL13 ENSGALG00000006179 472.60 4160.38 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
25. RPL29 ENSGALG00000026978 463.72 4082.21 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
26. RPL35 ENSGALG00000035677 460.39 4052.90 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
27. RPL19 ENSGALG00000001658 459.29 4043.21 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
28. gga-mir-3527 gga-mir-3527 455.40 4008.97
29. RPL38 ENSGALG00000001465 449.86 3960.20 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
30. MT-CYB MT-CYB 448.75 3950.43
31. RPS12 ENSGALG00000013990 434.32 3823.40 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
32. RPSA 433.21 3813.63 ribosomal protein SA
33. RPS29 ENSGALG00000012229 426.56 3755.09 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
34. RPL26 RPL26 410.47 3613.44
35. RPL7A ENSGALG00000003197 410.47 3613.44 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
36. RPS2 ENSGALG00000005490 406.59 3579.29 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
37. RPL27 ENSGALG00000002837 406.03 3574.36 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
38. RPS15A ENSGALG00000006771 406.03 3574.36 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
39. RPL37 ENSGALG00000014833 400.49 3525.59 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
40. MT-ND4 MT-ND4 399.38 3515.82
41. RPS3A ENSGALG00000010077 396.05 3486.50 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
42. TXN ENSGALG00000015704 388.84 3423.03 thioredoxin [Source:NCBI gene;Acc:396437]
43. RPL32 ENSGALG00000027142 367.21 3232.62 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
44. NME2 ENSGALG00000002932 360.00 3169.15 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
45. RPL36 ENSGALG00000000474 353.89 3115.36 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
46. RPL8 ENSGALG00000016232 353.34 3110.52 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
47. PPIA ENSGALG00000028600 348.35 3066.59 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
48. RPL12 ENSGALG00000008806 348.35 3066.59 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
49. RPS27A ENSGALG00000036790 348.35 3066.59 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
50. HBG1 HBG1 345.02 3037.27
51. GNB2L1 ENSGALG00000000122 344.46 3032.34 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
52. RPS16 ENSGALG00000026490 339.47 2988.42 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
53. TCEB3 ENSGALG00000034625 335.59 2954.26 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
54. MT-CO1 MT-CO1 326.71 2876.09
55. HMGN5 ENSGALG00000007131 320.06 2817.55 high mobility group nucleosome binding domain 5, transcript variant X1
56. RPS14 ENSGALG00000004588 312.85 2754.08 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
57. EIF5A2 ENSGALG00000009309 312.29 2749.15 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
58. RPL21 ENSGALG00000027035 311.74 2744.30 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
59. LDHB ENSGALG00000035836 306.75 2700.38 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
60. PHB2 ENSGALG00000014567 301.75 2656.36 prohibitin 2 [Source:NCBI gene;Acc:771124]
61. RPL23 ENSGALG00000001634 298.98 2631.98 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
62. RPL18A 297.32 2617.36 ribosomal protein L18a
63. RPS20 ENSGALG00000014432 295.65 2602.66 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
64. RPS4 RPS4 294.54 2592.89
65. RPS28 ENSGALG00000024398 292.32 2573.35 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
66. ANP32B ENSGALG00000037483 286.22 2519.65 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
67. SET ENSGALG00000004701 285.67 2514.81 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
68. RPL6 ENSGALG00000004818 282.34 2485.49 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
69. RPL36AL ENSGALG00000004952 270.14 2378.09 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
70. RPL24 ENSGALG00000015339 269.58 2373.16 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
71. RPL14 ENSGALG00000043379 266.81 2348.78 ribosomal protein L14
72. TMSB4X ENSGALG00000026383 265.14 2334.08 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
73. ATP5G3 258.49 2275.54 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
74. RPS17 ENSGALG00000002157 251.83 2216.91 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
75. EIF4G2 ENSGALG00000005587 251.28 2212.06 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
76. RPL37A ENSGALG00000011472 246.84 2172.98 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
77. PRDX1 ENSGALG00000010243 246.28 2168.05 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
78. RPS7 ENSGALG00000016392 246.28 2168.05 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
79. FKBP4 ENSGALG00000014331 245.17 2158.28 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
80. HBZ ENSGALG00000023740 236.85 2085.03 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
81. ENO1 ENSGALG00000002377 236.30 2080.19 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
82. RPL5 ENSGALG00000005922 232.97 2050.88 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
83. RPS13 ENSGALG00000006096 232.42 2046.04 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
84. CRHOA CRHOA 226.31 1992.25
85. ALDOC ENSGALG00000026077 224.65 1977.64 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
86. SLC25A6_1 ENSGALG00000016691 224.10 1972.79 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
87. H3-IX H3-IX 220.21 1938.55
88. ENSGALG00000028992 ENSGALG00000028992 217.99 1919.01
89. STMN1 ENSGALG00000001475 213.00 1875.08 stathmin 1 [Source:NCBI gene;Acc:396057]
90. ENSGALG00000002696 ENSGALG00000002696 212.45 1870.24
91. RPL7 ENSGALG00000035252 212.45 1870.24 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
92. ENSGALG00000028649 ENSGALG00000028649 211.89 1865.31
93. HSPA8 ENSGALG00000006512 211.34 1860.46 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
94. RAN ENSGALG00000002569 211.34 1860.46 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
95. RPLP2 ENSGALG00000034811 208.01 1831.15 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
96. UBB ENSGALG00000004509 208.01 1831.15 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
97. EEF1D 207.46 1826.31 eukaryotic translation elongation factor 1 delta, transcript variant X13
98. HNRNPDL ENSGALG00000023199 206.90 1821.38 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
99. MT-ND1 MT-ND1 204.68 1801.84
100. RPS25 ENSGALG00000007699 202.46 1782.29 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA