Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s59.

Sample reads: 113,726. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3993.54 35118.12
2. EEF1A EEF1A 1494.59 13143.03
3. CIRBP ENSGALG00000030918 1132.41 9958.11 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
4. RPL35A ENSGALG00000007611, ENSGALG00000041230 1007.23 8857.31 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
5. RPL23A ENSGALG00000003966 955.62 8403.47 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
6. RPLP1 ENSGALG00000030878 938.42 8252.21 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
7. RPS10 ENSGALG00000002813 883.95 7773.22 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
8. MT-ATP6 MT-ATP6 780.74 6865.62
9. RPL15 ENSGALG00000011290 780.74 6865.62 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
10. gga-mir-3533 ENSGALG00000027736 695.69 6117.71 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. RPS23 ENSGALG00000015617 676.58 5949.66 ribosomal protein S23
12. RPS21 ENSGALG00000005338 603.00 5302.62 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
13. RPL4 ENSGALG00000007711 600.13 5277.38 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
14. RPLP0 ENSGALG00000023294 598.22 5260.59 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
15. RPL27A ENSGALG00000005948 557.13 4899.25 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
16. RPS15 ENSGALG00000015195 552.35 4857.22 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
17. RPS8 ENSGALG00000010124 545.66 4798.39 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
18. GAPDH ENSGALG00000014442 538.97 4739.56 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
19. RPSA 513.17 4512.68 ribosomal protein SA
20. MT-ND5 MT-ND5 506.48 4453.85
21. RPL13 ENSGALG00000006179 504.57 4437.05 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
22. RPL32 ENSGALG00000027142 493.10 4336.19 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
23. RPL19 ENSGALG00000001658 486.41 4277.36 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
24. RPL29 ENSGALG00000026978 484.50 4260.56 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
25. RPS11 ENSGALG00000017299 483.54 4252.12 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
26. SNRPD1 ENSGALG00000041334 482.59 4243.77 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
27. RPL7A ENSGALG00000003197 478.77 4210.18 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
28. RPL35 ENSGALG00000035677 461.57 4058.92 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
29. RPS29 ENSGALG00000012229 457.74 4025.24 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
30. RPL27 ENSGALG00000002837 452.01 3974.86 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
31. MT-ND4 MT-ND4 431.94 3798.36
32. RPL26 RPL26 430.03 3781.57
33. RPS2 ENSGALG00000005490 427.16 3756.33 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
34. RPL8 ENSGALG00000016232 424.30 3731.18 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
35. RPS15A ENSGALG00000006771 412.83 3630.32 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
36. RPL38 ENSGALG00000001465 409.96 3605.08 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
37. gga-mir-3527 gga-mir-3527 407.09 3579.84
38. RPS3A ENSGALG00000010077 389.89 3428.59 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
39. MDK ENSGALG00000008367 383.20 3369.76 midkine [Source:NCBI gene;Acc:423196]
40. NME2 ENSGALG00000002932 377.47 3319.37 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
41. RPS4 RPS4 374.60 3294.13
42. RPS6 ENSGALG00000015082 373.65 3285.78 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
43. RPS16 ENSGALG00000026490 370.78 3260.54 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
44. HMGN5 ENSGALG00000007131 367.91 3235.30 high mobility group nucleosome binding domain 5, transcript variant X1
45. RPS27A ENSGALG00000036790 365.05 3210.15 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
46. PPIA ENSGALG00000028600 363.14 3193.36 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
47. RPL36 ENSGALG00000000474 363.14 3193.36 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
48. RPL12 ENSGALG00000008806 359.31 3159.68 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
49. TXN ENSGALG00000015704 357.40 3142.88 thioredoxin [Source:NCBI gene;Acc:396437]
50. MT-CYB MT-CYB 351.67 3092.49
51. RPS12 ENSGALG00000013990 345.94 3042.10 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
52. RPL23 ENSGALG00000001634 341.16 3000.07 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
53. HBG1 HBG1 335.42 2949.59
54. RPS14 ENSGALG00000004588 334.47 2941.24 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
55. RPL37 ENSGALG00000014833 329.69 2899.21 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
56. RPL24 ENSGALG00000015339 326.82 2873.97 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
57. GNB2L1 ENSGALG00000000122 321.09 2823.58 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
58. LDHB ENSGALG00000035836 320.13 2815.14 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
59. ANP32B ENSGALG00000037483 310.58 2731.16 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
60. TCEB3 ENSGALG00000034625 309.62 2722.72 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
61. RPL37A ENSGALG00000011472 301.02 2647.09 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
62. RPL18A 297.20 2613.50 ribosomal protein L18a
63. RPL14 ENSGALG00000043379 295.29 2596.70 ribosomal protein L14
64. MT-ND3 MT-ND3 288.60 2537.87
65. EIF5A2 ENSGALG00000009309 286.69 2521.08 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
66. RPS17 ENSGALG00000002157 285.73 2512.63 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
67. ENSGALG00000002696 ENSGALG00000002696 281.91 2479.04
68. PHB2 ENSGALG00000014567 281.91 2479.04 prohibitin 2 [Source:NCBI gene;Acc:771124]
69. ATP5G3 278.09 2445.45 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
70. RPL21 ENSGALG00000027035 273.31 2403.42 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
71. RAN ENSGALG00000002569 271.40 2386.62 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
72. RPL7 ENSGALG00000035252 271.40 2386.62 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
73. RPS13 ENSGALG00000006096 264.71 2327.79 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
74. RPS20 ENSGALG00000014432 264.71 2327.79 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
75. HBZ ENSGALG00000023740 261.84 2302.55 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
76. RPL6 ENSGALG00000004818 260.88 2294.11 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
77. MT-CO1 MT-CO1 258.02 2268.96
78. EIF4G2 ENSGALG00000005587 257.06 2260.52 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
79. RPS7 ENSGALG00000016392 257.06 2260.52 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
80. SET ENSGALG00000004701 256.11 2252.16 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
81. RPL5 ENSGALG00000005922 254.20 2235.37 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
82. CRHOA CRHOA 249.42 2193.33
83. RPL36AL ENSGALG00000004952 249.42 2193.33 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
84. ENO1 ENSGALG00000002377 242.73 2134.50 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
85. RPS28 ENSGALG00000024398 240.82 2117.71 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
86. FKBP4 ENSGALG00000014331 239.86 2109.26 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
87. HNRNPDL ENSGALG00000023199 233.17 2050.43 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
88. TMSB4X ENSGALG00000026383 231.26 2033.64 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
89. STMN1 ENSGALG00000001475 230.30 2025.20 stathmin 1 [Source:NCBI gene;Acc:396057]
90. SLC25A6_1 ENSGALG00000016691 224.57 1974.81 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
91. RPS25 ENSGALG00000007699 223.62 1966.45 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
92. ALDOC ENSGALG00000026077 217.88 1915.98 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
93. CCT4 ENSGALG00000008812 215.97 1899.18 chaperonin containing TCP1 subunit 4 [Source:NCBI gene;Acc:395414]
94. HSPA8 ENSGALG00000006512 215.97 1899.18 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
95. PRDX1 ENSGALG00000010243 214.06 1882.39 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
96. UBB ENSGALG00000004509 214.06 1882.39 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
97. HBE 210.24 1848.79 hemoglobin subunit epsilon
98. RPLP2 ENSGALG00000034811 209.28 1840.35 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
99. H3-IX H3-IX 206.41 1815.11
100. SEC61G ENSGALG00000037863 206.41 1815.11 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA