Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s57.

Sample reads: 113,722. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3907.66 34363.14
2. EEF1A EEF1A 1407.20 12374.62
3. CIRBP ENSGALG00000030918 1151.67 10127.54 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
4. RPL35A ENSGALG00000007611, ENSGALG00000041230 891.59 7840.45 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
5. gga-mir-3533 ENSGALG00000027736 885.20 7784.26 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
6. RPLP1 ENSGALG00000030878 839.57 7383.00 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
7. RPL23A ENSGALG00000003966 812.19 7142.23 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
8. RPS10 ENSGALG00000002813 778.43 6845.35 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
9. MT-ATP6 MT-ATP6 739.19 6500.28
10. RPL15 ENSGALG00000011290 678.05 5962.63 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
11. RPL4 ENSGALG00000007711 677.13 5954.54 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
12. RPS8 ENSGALG00000010124 642.45 5649.57 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
13. RPS23 ENSGALG00000015617 626.94 5513.18 ribosomal protein S23
14. RPLP0 ENSGALG00000023294 622.38 5473.08 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
15. RPL35 ENSGALG00000035677 594.09 5224.30 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
16. GAPDH ENSGALG00000014442 572.19 5031.72 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
17. MDK ENSGALG00000008367 547.55 4815.04 midkine [Source:NCBI gene;Acc:423196]
18. MT-ND5 MT-ND5 515.61 4534.17
19. RPS21 ENSGALG00000005338 503.74 4429.78 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
20. RPL27A ENSGALG00000005948 493.70 4341.49 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
21. RPS6 ENSGALG00000015082 488.23 4293.39 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
22. RPL19 ENSGALG00000001658 483.67 4253.29 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
23. RPL13 ENSGALG00000006179 481.84 4237.20 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
24. RPL8 ENSGALG00000016232 481.84 4237.20 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
25. RPL29 ENSGALG00000026978 474.54 4173.00 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
26. gga-mir-3527 gga-mir-3527 474.54 4173.00
27. RPL38 ENSGALG00000001465 468.15 4116.81 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
28. RPS2 ENSGALG00000005490 459.94 4044.62 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
29. SNRPD1 ENSGALG00000041334 458.11 4028.52 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
30. RPL27 ENSGALG00000002837 457.20 4020.52 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
31. RPS15 ENSGALG00000015195 452.64 3980.42 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
32. RPS12 ENSGALG00000013990 443.51 3900.13 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
33. RPSA 429.82 3779.75 ribosomal protein SA
34. MT-ND4 MT-ND4 418.87 3683.45
35. RPL7A ENSGALG00000003197 417.96 3675.45 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
36. RPL32 ENSGALG00000027142 417.05 3667.45 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
37. RPS29 ENSGALG00000012229 399.71 3514.97 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
38. RPL26 RPL26 396.06 3482.87
39. HMGN5 ENSGALG00000007131 394.23 3466.78 high mobility group nucleosome binding domain 5, transcript variant X1
40. RPL36 ENSGALG00000000474 389.67 3426.68 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
41. RPS16 ENSGALG00000026490 388.76 3418.67 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
42. RPS15A ENSGALG00000006771 374.16 3290.28 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
43. RPS27A ENSGALG00000036790 373.24 3282.19 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
44. RPS11 ENSGALG00000017299 370.51 3258.19 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
45. TXN ENSGALG00000015704 360.47 3169.90 thioredoxin [Source:NCBI gene;Acc:396437]
46. RPL12 ENSGALG00000008806 359.56 3161.89 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
47. HBG1 HBG1 352.26 3097.70
48. NME2 ENSGALG00000002932 351.34 3089.61 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
49. RPL37 ENSGALG00000014833 351.34 3089.61 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
50. MT-CYB MT-CYB 348.60 3065.51
51. RPS3A ENSGALG00000010077 344.95 3033.42 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
52. RPL18A 338.57 2977.31 ribosomal protein L18a
53. PPIA ENSGALG00000028600 337.65 2969.22 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
54. RPL37A ENSGALG00000011472 334.92 2945.22 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
55. HBZ ENSGALG00000023740 321.23 2824.83 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
56. RPL21 ENSGALG00000027035 313.93 2760.63 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
57. GNB2L1 ENSGALG00000000122 313.01 2752.54 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
58. SET ENSGALG00000004701 305.71 2688.35 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
59. MT-CO1 MT-CO1 303.89 2672.34
60. TMSB4X ENSGALG00000026383 303.89 2672.34 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
61. RPL23 ENSGALG00000001634 302.06 2656.25 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
62. RPS4 RPS4 302.06 2656.25
63. EIF5A2 ENSGALG00000009309 292.94 2576.05 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
64. RAN ENSGALG00000002569 287.46 2527.86 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
65. LDHB ENSGALG00000035836 283.81 2495.77 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
66. RPL6 ENSGALG00000004818 281.99 2479.76 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
67. RPS14 ENSGALG00000004588 279.25 2455.67 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
68. PHB2 ENSGALG00000014567 278.34 2447.66 prohibitin 2 [Source:NCBI gene;Acc:771124]
69. RPL14 ENSGALG00000043379 276.51 2431.57 ribosomal protein L14
70. EIF4G2 ENSGALG00000005587 272.86 2399.47 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
71. RPS20 ENSGALG00000014432 272.86 2399.47 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
72. RPL5 ENSGALG00000005922 271.04 2383.47 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
73. RPS7 ENSGALG00000016392 263.74 2319.27 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
74. TCEB3 ENSGALG00000034625 263.74 2319.27 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
75. RPS13 ENSGALG00000006096 261.91 2303.18 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
76. RPL24 ENSGALG00000015339 258.26 2271.08 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
77. RPL7 ENSGALG00000035252 250.05 2198.89 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
78. H3-IX H3-IX 249.13 2190.80
79. ENSGALG00000002696 ENSGALG00000002696 243.66 2142.69
80. ATP5G3 242.75 2134.69 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
81. RPL36AL ENSGALG00000004952 241.83 2126.60 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
82. CRHOA CRHOA 240.92 2118.60
83. HSPA8 ENSGALG00000006512 240.01 2110.60 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
84. ENSGALG00000028992 ENSGALG00000028992 233.62 2054.41
85. RPS25 ENSGALG00000007699 231.79 2038.31 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
86. ALDOC ENSGALG00000026077 229.97 2022.31 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
87. EEF1D 228.14 2006.22 eukaryotic translation elongation factor 1 delta, transcript variant X13
88. ENO1 ENSGALG00000002377 228.14 2006.22 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
89. HNRNPDL ENSGALG00000023199 227.23 1998.21 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
90. MT-ND3 MT-ND3 226.32 1990.21
91. ANP32B ENSGALG00000037483 225.41 1982.21 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
92. UBB ENSGALG00000004509 222.67 1958.11 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
93. RPS17 ENSGALG00000002157 219.93 1934.02 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
94. HBE 217.19 1909.92 hemoglobin subunit epsilon
95. PRDX1 ENSGALG00000010243 217.19 1909.92 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
96. FKBP4 ENSGALG00000014331 211.72 1861.82 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
97. RPS28 ENSGALG00000024398 205.33 1805.63 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
98. CCT4 ENSGALG00000008812 203.50 1789.54 chaperonin containing TCP1 subunit 4 [Source:NCBI gene;Acc:395414]
99. STMN1 ENSGALG00000001475 202.59 1781.53 stathmin 1 [Source:NCBI gene;Acc:396057]
100. ENSGALG00000028649 ENSGALG00000028649 199.85 1757.44
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA