Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s53.

Sample reads: 113,422. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4419.59 38967.09
2. RPL35A ENSGALG00000007611, ENSGALG00000041230 1088.16 9594.20 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
3. EEF1A EEF1A 999.22 8810.02
4. MT-ATP6 MT-ATP6 979.34 8634.74
5. CIRBP ENSGALG00000030918 957.37 8441.04 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
6. MT-ND5 MT-ND5 930.16 8201.13
7. gga-mir-3533 ENSGALG00000027736 843.32 7435.47 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. RPS10 ENSGALG00000002813 833.90 7352.41 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
9. RPLP1 ENSGALG00000030878 773.22 6817.40 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
10. RPL4 ENSGALG00000007711 738.69 6512.96 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
11. MDK ENSGALG00000008367 681.14 6005.54 midkine [Source:NCBI gene;Acc:423196]
12. RPL23A ENSGALG00000003966 627.78 5535.07 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
13. RPS23 ENSGALG00000015617 593.25 5230.63 ribosomal protein S23
14. RPL15 ENSGALG00000011290 590.12 5203.03 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
15. RPLP0 ENSGALG00000023294 576.51 5083.03 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
16. HMGN5 ENSGALG00000007131 524.20 4621.82 high mobility group nucleosome binding domain 5, transcript variant X1
17. GAPDH ENSGALG00000014442 516.87 4557.19 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
18. RPS21 ENSGALG00000005338 512.69 4520.34 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
19. RPS8 ENSGALG00000010124 508.50 4483.39 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
20. RPL27A ENSGALG00000005948 477.11 4206.63 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
21. RPL19 ENSGALG00000001658 468.74 4132.83 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
22. RPL7A ENSGALG00000003197 445.73 3929.96 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
23. RPS29 ENSGALG00000012229 443.63 3911.44 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
24. RPL8 ENSGALG00000016232 441.54 3893.01 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
25. RPL29 ENSGALG00000026978 440.49 3883.76 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
26. gga-mir-3527 gga-mir-3527 439.45 3874.59
27. RPS15 ENSGALG00000015195 437.36 3856.16 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
28. MT-ND4 MT-ND4 435.26 3837.64
29. RPSA 432.12 3809.96 ribosomal protein SA
30. SNRPD1 ENSGALG00000041334 418.52 3690.05 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
31. PPIA ENSGALG00000028600 416.43 3671.62 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
32. RPL26 RPL26 413.29 3643.94
33. MT-CYB MT-CYB 411.20 3625.51
34. RPL13 ENSGALG00000006179 410.15 3616.25 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
35. RPS28 ENSGALG00000024398 402.83 3551.71 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
36. RPL27 ENSGALG00000002837 396.55 3496.34 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
37. RPS12 ENSGALG00000013990 395.50 3487.08 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
38. RPL38 ENSGALG00000001465 390.27 3440.97 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
39. RPS11 ENSGALG00000017299 383.99 3385.60 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
40. RPL35 ENSGALG00000035677 380.85 3357.92 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
41. RPS3A ENSGALG00000010077 372.48 3284.12 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
42. RPS15A ENSGALG00000006771 371.44 3274.95 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
43. RPS2 ENSGALG00000005490 371.44 3274.95 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
44. RPL12 ENSGALG00000008806 363.07 3201.15 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
45. ENSGALG00000018384 ENSGALG00000018384 354.70 3127.35
46. RPS6 ENSGALG00000015082 354.70 3127.35 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
47. GNB2L1 ENSGALG00000000122 352.60 3108.84 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
48. RPL21 ENSGALG00000027035 351.56 3099.67 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
49. RPL36 ENSGALG00000000474 345.28 3044.30 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
50. TXN ENSGALG00000015704 343.19 3025.87 thioredoxin [Source:NCBI gene;Acc:396437]
51. RPS4 RPS4 341.10 3007.45
52. RPL24 ENSGALG00000015339 333.77 2942.82 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
53. RPS16 ENSGALG00000026490 332.72 2933.56 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
54. ANP32B ENSGALG00000037483 330.63 2915.13 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
55. RPS27A ENSGALG00000036790 328.54 2896.70 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
56. RPL14 ENSGALG00000043379 325.40 2869.02 ribosomal protein L14
57. MT-CO1 MT-CO1 324.35 2859.76
58. SET ENSGALG00000004701 317.03 2795.22 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
59. ENSGALG00000028649 ENSGALG00000028649 306.57 2703.00
60. RPL37 ENSGALG00000014833 306.57 2703.00 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
61. EIF5A2 ENSGALG00000009309 300.29 2647.63 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
62. NME2 ENSGALG00000002932 300.29 2647.63 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
63. RPL32 ENSGALG00000027142 299.24 2638.37 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
64. PHB2 ENSGALG00000014567 291.92 2573.83 prohibitin 2 [Source:NCBI gene;Acc:771124]
65. RPL23 ENSGALG00000001634 289.83 2555.40 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
66. RPL6 ENSGALG00000004818 288.78 2546.14 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
67. RPL18A 284.59 2509.20 ribosomal protein L18a
68. TMSB4X ENSGALG00000026383 280.41 2472.35 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
69. RPS7 ENSGALG00000016392 277.27 2444.66 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
70. RPS25 ENSGALG00000007699 264.72 2334.01 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
71. HBZ ENSGALG00000023740 256.34 2260.12 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
72. TCEB3 ENSGALG00000034625 251.11 2214.01 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
73. HBG1 HBG1 250.07 2204.84
74. ALDOC ENSGALG00000026077 241.70 2131.05 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
75. LDHB ENSGALG00000035836 238.56 2103.36 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
76. ENSGALG00000002696 ENSGALG00000002696 237.51 2094.10
77. RPS14 ENSGALG00000004588 237.51 2094.10 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
78. RPL7 ENSGALG00000035252 235.42 2075.67 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
79. ENO1 ENSGALG00000002377 232.28 2047.99 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
80. RPL37A ENSGALG00000011472 232.28 2047.99 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
81. HSPA8 ENSGALG00000006512 231.23 2038.73 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
82. ATP5G3 229.14 2020.30 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
83. RPLP2 ENSGALG00000034811 229.14 2020.30 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
84. RPS20 ENSGALG00000014432 226.00 1992.62 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
85. FKBP4 ENSGALG00000014331 221.82 1955.77 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
86. PRDX1 ENSGALG00000010243 218.68 1928.08 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
87. SLC25A6_1 ENSGALG00000016691 211.35 1863.45 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
88. UBB ENSGALG00000004509 207.17 1826.60 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
89. HBE 206.12 1817.34 hemoglobin subunit epsilon
90. MT-ND1 MT-ND1 205.08 1808.17
91. CRHOA CRHOA 204.03 1798.91
92. RPL10A ENSGALG00000002644 204.03 1798.91 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
93. ENSGALG00000028992 ENSGALG00000028992 201.94 1780.49
94. MT-ND3 MT-ND3 200.89 1771.23
95. RAN ENSGALG00000002569 200.89 1771.23 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
96. RPL36AL ENSGALG00000004952 199.84 1761.97 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
97. H3-IX H3-IX 197.75 1743.54
98. NCL ENSGALG00000032930 196.71 1734.37 nucleolin [Source:NCBI gene;Acc:396201]
99. SEC61G ENSGALG00000037863 195.66 1725.11 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
100. STMN1 ENSGALG00000001475 195.66 1725.11 stathmin 1 [Source:NCBI gene;Acc:396057]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA