Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s52.

Sample reads: 113,647. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4089.80 35987.63
2. EEF1A EEF1A 1501.03 13208.10
3. CIRBP ENSGALG00000030918 1036.74 9122.65 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
4. RPL35A ENSGALG00000007611, ENSGALG00000041230 966.39 8503.61 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
5. RPLP1 ENSGALG00000030878 950.56 8364.32 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
6. MT-ATP6 MT-ATP6 846.80 7451.30
7. gga-mir-3533 ENSGALG00000027736 814.27 7165.06 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. RPS10 ENSGALG00000002813 791.40 6963.81 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
9. RPL23A ENSGALG00000003966 778.21 6847.75 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
10. MT-ND5 MT-ND5 736.88 6484.07
11. RPL4 ENSGALG00000007711 660.38 5810.92 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
12. RPL15 ENSGALG00000011290 632.24 5563.31 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
13. RPS23 ENSGALG00000015617 595.31 5238.35 ribosomal protein S23
14. GAPDH ENSGALG00000014442 575.97 5068.17 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
15. RPS8 ENSGALG00000010124 568.93 5006.22 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
16. RPLP0 ENSGALG00000023294 565.41 4975.25 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
17. MDK ENSGALG00000008367 553.98 4874.67 midkine [Source:NCBI gene;Acc:423196]
18. RPL19 ENSGALG00000001658 548.71 4828.30 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
19. RPS21 ENSGALG00000005338 543.43 4781.84 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
20. RPL27 ENSGALG00000002837 517.93 4557.45 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
21. gga-mir-3527 gga-mir-3527 507.38 4464.62
22. RPS15 ENSGALG00000015195 496.83 4371.79 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
23. RPL27A ENSGALG00000005948 484.51 4263.38 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
24. RPS11 ENSGALG00000017299 483.64 4255.72 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
25. SNRPD1 ENSGALG00000041334 476.60 4193.78 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
26. RPL13 ENSGALG00000006179 459.01 4038.99 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
27. RPL8 ENSGALG00000016232 454.62 4000.37 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
28. RPS29 ENSGALG00000012229 447.58 3938.42 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
29. RPL35 ENSGALG00000035677 444.07 3907.53 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
30. RPL29 ENSGALG00000026978 436.15 3837.84 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
31. RPSA 436.15 3837.84 ribosomal protein SA
32. MT-ND4 MT-ND4 421.20 3706.29
33. RPL7A ENSGALG00000003197 413.29 3636.69 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
34. RPS15A ENSGALG00000006771 409.77 3605.71 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
35. RPS6 ENSGALG00000015082 404.50 3559.34 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
36. HMGN5 ENSGALG00000007131 402.74 3543.85 high mobility group nucleosome binding domain 5, transcript variant X1
37. RPL26 RPL26 402.74 3543.85
38. RPL38 ENSGALG00000001465 400.98 3528.37 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
39. PPIA ENSGALG00000028600 386.91 3404.56 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
40. RPS2 ENSGALG00000005490 384.27 3381.33 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
41. RPS27A ENSGALG00000036790 378.99 3334.87 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
42. RPL36 ENSGALG00000000474 373.72 3288.50 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
43. RPS16 ENSGALG00000026490 372.84 3280.75 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
44. RPS3A ENSGALG00000010077 371.96 3273.01 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
45. RPS12 ENSGALG00000013990 371.08 3265.27 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
46. RPL32 ENSGALG00000027142 365.80 3218.81 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
47. MT-CYB MT-CYB 359.65 3164.69
48. RPS4 RPS4 347.34 3056.37
49. NME2 ENSGALG00000002932 345.58 3040.88 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
50. RPL21 ENSGALG00000027035 340.30 2994.42 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
51. TXN ENSGALG00000015704 335.91 2955.79 thioredoxin [Source:NCBI gene;Acc:396437]
52. RPS28 ENSGALG00000024398 320.96 2824.24 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
53. RPL12 ENSGALG00000008806 317.44 2793.27 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
54. GNB2L1 ENSGALG00000000122 313.92 2762.30 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
55. RPL37 ENSGALG00000014833 310.41 2731.41 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
56. RPL7 ENSGALG00000035252 307.77 2708.18 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
57. MT-CO1 MT-CO1 306.89 2700.44
58. RPS14 ENSGALG00000004588 305.13 2684.95 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
59. RPL37A ENSGALG00000011472 301.61 2653.98 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
60. RPS7 ENSGALG00000016392 300.73 2646.23 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
61. RPL23 ENSGALG00000001634 296.34 2607.60 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
62. SET ENSGALG00000004701 296.34 2607.60 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
63. RPL6 ENSGALG00000004818 293.70 2584.37 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
64. RPL24 ENSGALG00000015339 291.94 2568.89 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
65. ANP32B ENSGALG00000037483 289.30 2545.66 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
66. TCEB3 ENSGALG00000034625 288.42 2537.91 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
67. RPL18A 286.66 2522.42 ribosomal protein L18a
68. ENSGALG00000028649 ENSGALG00000028649 282.27 2483.80
69. HBG1 HBG1 282.27 2483.80
70. PHB2 ENSGALG00000014567 270.84 2383.22 prohibitin 2 [Source:NCBI gene;Acc:771124]
71. RPS17 ENSGALG00000002157 266.44 2344.50 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
72. LDHB ENSGALG00000035836 265.56 2336.76 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
73. HBZ ENSGALG00000023740 258.53 2274.90 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
74. RPL14 ENSGALG00000043379 258.53 2274.90 ribosomal protein L14
75. FKBP4 ENSGALG00000014331 256.77 2259.41 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
76. ENSGALG00000002696 ENSGALG00000002696 254.13 2236.18
77. TMSB4X ENSGALG00000026383 251.49 2212.95 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
78. EIF5A2 ENSGALG00000009309 240.94 2120.12 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
79. RPS13 ENSGALG00000006096 240.94 2120.12 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
80. ENO1 ENSGALG00000002377 240.06 2112.37 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
81. RPL5 ENSGALG00000005922 237.42 2089.14 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
82. ATP5G3 236.54 2081.40 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
83. RPL36AL ENSGALG00000004952 232.14 2042.68 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
84. ENSGALG00000028992 ENSGALG00000028992 227.75 2004.05
85. RPS20 ENSGALG00000014432 225.99 1988.57 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
86. RAN ENSGALG00000002569 223.35 1965.34 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
87. SLC25A6_1 ENSGALG00000016691 223.35 1965.34 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
88. H3-IX H3-IX 222.47 1957.59
89. RPLP2 ENSGALG00000034811 222.47 1957.59 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
90. HSPA8 ENSGALG00000006512 218.95 1926.62 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
91. PRDX1 ENSGALG00000010243 218.08 1918.96 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
92. UBB ENSGALG00000004509 216.32 1903.48 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
93. ALDOC ENSGALG00000026077 215.44 1895.73 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
94. MT-ND3 MT-ND3 211.92 1864.76
95. CRHOA CRHOA 208.40 1833.79
96. HNRNPDL ENSGALG00000023199 207.52 1826.04 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
97. EIF4G2 ENSGALG00000005587 204.89 1802.90 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
98. SEC61G ENSGALG00000037863 201.37 1771.93 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
99. STMN1 ENSGALG00000001475 201.37 1771.93 stathmin 1 [Source:NCBI gene;Acc:396057]
100. EEF1D 199.61 1756.44 eukaryotic translation elongation factor 1 delta, transcript variant X13
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA