Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s50.

Sample reads: 113,497. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4209.51 37089.89
2. CIRBP ENSGALG00000030918 1084.25 9553.30 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
3. EEF1A EEF1A 1056.48 9308.62
4. RPL35A ENSGALG00000007611, ENSGALG00000041230 1056.48 9308.62 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
5. RPLP1 ENSGALG00000030878 889.87 7840.62 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
6. gga-mir-3533 ENSGALG00000027736 852.00 7506.95 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. RPS10 ENSGALG00000002813 849.47 7484.66 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
8. RPL23A ENSGALG00000003966 806.56 7106.58 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
9. MT-ATP6 MT-ATP6 716.94 6316.94
10. RPL4 ENSGALG00000007711 658.88 5805.38 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
11. RPL15 ENSGALG00000011290 603.34 5316.01 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
12. RPS8 ENSGALG00000010124 590.72 5204.82 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
13. RPL27A ENSGALG00000005948 580.62 5115.83 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
14. RPS23 ENSGALG00000015617 544.02 4793.35 ribosomal protein S23
15. MT-ND5 MT-ND5 541.49 4771.05
16. HMGN5 ENSGALG00000007131 530.13 4670.96 high mobility group nucleosome binding domain 5, transcript variant X1
17. GAPDH ENSGALG00000014442 526.35 4637.66 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
18. MDK ENSGALG00000008367 525.08 4626.47 midkine [Source:NCBI gene;Acc:423196]
19. RPL13 ENSGALG00000006179 508.68 4481.97 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
20. RPS21 ENSGALG00000005338 492.27 4337.38 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
21. RPL19 ENSGALG00000001658 485.96 4281.78 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
22. RPL38 ENSGALG00000001465 483.43 4259.49 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
23. RPS15 ENSGALG00000015195 482.17 4248.39 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
24. RPL29 ENSGALG00000026978 461.97 4070.41 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
25. HBG1 HBG1 460.71 4059.30
26. RPL8 ENSGALG00000016232 456.92 4025.91 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
27. RPSA 456.92 4025.91 ribosomal protein SA
28. RPLP0 ENSGALG00000023294 455.66 4014.81 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
29. RPL27 ENSGALG00000002837 445.56 3925.82 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
30. MT-ND4 MT-ND4 440.52 3881.41
31. SNRPD1 ENSGALG00000041334 439.25 3870.22 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
32. RPS29 ENSGALG00000012229 436.73 3848.02 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
33. RPL7A ENSGALG00000003197 426.63 3759.03 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
34. RPS12 ENSGALG00000013990 420.32 3703.43 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
35. RPS15A ENSGALG00000006771 420.32 3703.43 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
36. RPS6 ENSGALG00000015082 415.27 3658.93 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
37. RPL26 RPL26 414.01 3647.83
38. RPS3A ENSGALG00000010077 408.96 3603.34 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
39. RPS2 ENSGALG00000005490 405.17 3569.94 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
40. RPL35 ENSGALG00000035677 392.55 3458.75 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
41. gga-mir-3527 gga-mir-3527 387.50 3414.25
42. RPL12 ENSGALG00000008806 379.93 3347.55 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
43. RPL36 ENSGALG00000000474 368.57 3247.46 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
44. TXN ENSGALG00000015704 367.31 3236.36 thioredoxin [Source:NCBI gene;Acc:396437]
45. PPIA ENSGALG00000028600 363.52 3202.97 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
46. NME2 ENSGALG00000002932 361.00 3180.76 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
47. RPS16 ENSGALG00000026490 358.47 3158.47 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
48. HBZ ENSGALG00000023740 357.21 3147.37 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
49. MT-CO1 MT-CO1 357.21 3147.37
50. RPL32 ENSGALG00000027142 357.21 3147.37 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
51. RPS27A ENSGALG00000036790 348.37 3069.48 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
52. RPS11 ENSGALG00000017299 347.11 3058.38 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
53. RPS4 RPS4 339.54 2991.68
54. MT-CYB MT-CYB 335.75 2958.28
55. SET ENSGALG00000004701 334.49 2947.18 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
56. RPL18A 325.65 2869.29 ribosomal protein L18a
57. RPL14 ENSGALG00000043379 321.87 2835.99 ribosomal protein L14
58. TCEB3 ENSGALG00000034625 313.03 2758.10 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
59. RPL37 ENSGALG00000014833 311.77 2747.00 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
60. PHB2 ENSGALG00000014567 309.24 2724.71 prohibitin 2 [Source:NCBI gene;Acc:771124]
61. RPL21 ENSGALG00000027035 309.24 2724.71 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
62. RPS7 ENSGALG00000016392 307.98 2713.60 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
63. RPS28 ENSGALG00000024398 305.46 2691.40 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
64. RPS14 ENSGALG00000004588 300.41 2646.90 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
65. GNB2L1 ENSGALG00000000122 284.00 2502.32 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
66. RPL24 ENSGALG00000015339 282.74 2491.22 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
67. ANP32B ENSGALG00000037483 271.38 2391.12 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
68. RAN ENSGALG00000002569 270.12 2380.02 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
69. ENO1 ENSGALG00000002377 268.85 2368.83 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
70. RPL23 ENSGALG00000001634 266.33 2346.63 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
71. HBE 265.07 2335.53 hemoglobin subunit epsilon
72. CRHOA CRHOA 260.02 2291.03
73. EIF5A2 ENSGALG00000009309 258.76 2279.93 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
74. MT-ND3 MT-ND3 257.49 2268.74
75. RPL6 ENSGALG00000004818 257.49 2268.74 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
76. RPS20 ENSGALG00000014432 257.49 2268.74 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
77. ENSGALG00000002696 ENSGALG00000002696 252.44 2224.24
78. ENSGALG00000028649 ENSGALG00000028649 249.92 2202.04
79. TMSB4X ENSGALG00000026383 248.66 2190.94 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
80. RPL37A ENSGALG00000011472 242.35 2135.34 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
81. RPS13 ENSGALG00000006096 236.04 2079.74 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
82. RPS17 ENSGALG00000002157 236.04 2079.74 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
83. RPL10A ENSGALG00000002644 234.77 2068.55 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
84. PRDX1 ENSGALG00000010243 229.72 2024.06 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
85. UBB ENSGALG00000004509 229.72 2024.06 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
86. ATP5G3 227.20 2001.85 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
87. LDHB ENSGALG00000035836 224.68 1979.65 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
88. RPL7 ENSGALG00000035252 224.68 1979.65 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
89. RPL5 ENSGALG00000005922 222.15 1957.36 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
90. RPL36AL ENSGALG00000004952 220.89 1946.26 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
91. HSPA8 ENSGALG00000006512 215.84 1901.76 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
92. ENSGALG00000028992 ENSGALG00000028992 214.58 1890.66
93. SEC61G ENSGALG00000037863 214.58 1890.66 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
94. SLC25A6_1 ENSGALG00000016691 213.32 1879.56 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
95. EIF4G2 ENSGALG00000005587 210.79 1857.27 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
96. RPS25 ENSGALG00000007699 207.00 1823.87 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
97. AKAP12 ENSGALG00000036240 201.96 1779.46 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
98. NUCKS1 ENSGALG00000000708 193.12 1701.58 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
99. STMN1 ENSGALG00000001475 190.60 1679.37 stathmin 1 [Source:NCBI gene;Acc:396057]
100. HNRNPDL ENSGALG00000023199 185.55 1634.88 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA