Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s5.

Sample reads: 113,896. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 2511.61 22052.62
2. EEF1A EEF1A 1411.10 12389.84
3. RPL35A ENSGALG00000007611, ENSGALG00000041230 1358.84 11930.99 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
4. CIRBP ENSGALG00000030918 1181.14 10370.73 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
5. RPL23A ENSGALG00000003966 1128.88 9911.88 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
6. RPS23 ENSGALG00000015617 1110.96 9754.53 ribosomal protein S23
7. RPS21 ENSGALG00000005338 1094.53 9610.27 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
8. RPLP1 ENSGALG00000030878 937.75 8233.70 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
9. RPS8 ENSGALG00000010124 915.35 8037.02 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
10. RPS10 ENSGALG00000002813 897.43 7879.68 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
11. RPL4 ENSGALG00000007711 839.19 7368.32 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
12. RPL35 ENSGALG00000035677 816.79 7171.64 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
13. SNRPD1 ENSGALG00000041334 783.94 6883.21 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
14. RPL27A ENSGALG00000005948 773.49 6791.45 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
15. RPS15 ENSGALG00000015195 719.73 6319.43 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
16. RPL13 ENSGALG00000006179 665.98 5847.49 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
17. RPS15A ENSGALG00000006771 642.09 5637.73 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
18. RPL27 ENSGALG00000002837 631.63 5545.88 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
19. gga-mir-3527 gga-mir-3527 616.70 5414.80
20. RPL36 ENSGALG00000000474 606.25 5323.04 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
21. MT-ND5 MT-ND5 597.29 5244.37
22. RPL29 ENSGALG00000026978 595.80 5231.29 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
23. RPL7A ENSGALG00000003197 525.62 4615.09 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
24. RPL14 ENSGALG00000043379 515.16 4523.25 ribosomal protein L14
25. RPL23 ENSGALG00000001634 510.68 4483.91 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
26. RPL32 ENSGALG00000027142 510.68 4483.91 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
27. RPS27A ENSGALG00000036790 510.68 4483.91 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
28. RPS11 ENSGALG00000017299 495.75 4352.82 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
29. RPL19 ENSGALG00000001658 486.79 4274.15 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
30. RPS16 ENSGALG00000026490 483.81 4247.98 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
31. RPS29 ENSGALG00000012229 467.38 4103.72 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
32. RPL18A 465.89 4090.64 ribosomal protein L18a
33. TXN ENSGALG00000015704 449.46 3946.38 thioredoxin [Source:NCBI gene;Acc:396437]
34. RPL12 ENSGALG00000008806 439.01 3854.63 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
35. RPSA 433.04 3802.21 ribosomal protein SA
36. RPL38 ENSGALG00000001465 430.05 3775.96 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
37. RPS4 RPS4 430.05 3775.96
38. RPL24 ENSGALG00000015339 427.06 3749.70 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
39. TCEB3 ENSGALG00000034625 427.06 3749.70 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
40. RPS2 ENSGALG00000005490 422.58 3710.37 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
41. RPL15 ENSGALG00000011290 418.10 3671.03 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
42. RPL37 ENSGALG00000014833 416.61 3657.95 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
43. RPL7 ENSGALG00000035252 404.66 3553.03 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
44. RPL8 ENSGALG00000016232 401.68 3526.86 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
45. RPS14 ENSGALG00000004588 401.68 3526.86 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
46. MT-ATP6 MT-ATP6 386.75 3395.77
47. RPL26 RPL26 386.75 3395.77
48. ATP5G3 385.25 3382.60 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
49. LDHB ENSGALG00000035836 376.29 3303.93 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
50. RPL31 ENSGALG00000016775 368.83 3238.43 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
51. RPL36AL ENSGALG00000004952 368.83 3238.43 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
52. RPS17 ENSGALG00000002157 368.83 3238.43 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
53. MT-ND4 MT-ND4 350.91 3081.09
54. RPS7 ENSGALG00000016392 341.95 3002.41 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
55. NME2 ENSGALG00000002932 340.46 2989.33 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
56. RPL21 ENSGALG00000027035 340.46 2989.33 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
57. EIF5A2 ENSGALG00000009309 335.98 2950.00 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
58. SSR1 ENSGALG00000012798 318.06 2792.65 signal sequence receptor subunit 1 [Source:NCBI gene;Acc:420871]
59. ENO1 ENSGALG00000002377 300.14 2635.31 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
60. RPS12 ENSGALG00000013990 300.14 2635.31 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
61. CCT4 ENSGALG00000008812 295.66 2595.98 chaperonin containing TCP1 subunit 4 [Source:NCBI gene;Acc:395414]
62. PPIA ENSGALG00000028600 294.17 2582.89 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
63. RAN ENSGALG00000002569 294.17 2582.89 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
64. RPS13 ENSGALG00000006096 282.22 2477.97 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
65. GNB2L1 ENSGALG00000000122 280.73 2464.89 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
66. MT-CYB MT-CYB 279.23 2451.72
67. RPS3A ENSGALG00000010077 276.25 2425.55 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
68. ANP32B ENSGALG00000037483 274.75 2412.38 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
69. ENSGALG00000002696 ENSGALG00000002696 274.75 2412.38
70. EIF4G2 ENSGALG00000005587 273.26 2399.30 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
71. STMN1 ENSGALG00000001475 271.77 2386.22 stathmin 1 [Source:NCBI gene;Acc:396057]
72. PRDX1 ENSGALG00000010243 264.30 2320.63 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
73. gga-mir-3533 ENSGALG00000027736 264.30 2320.63 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
74. MT-ND3 MT-ND3 256.83 2255.04
75. SET ENSGALG00000004701 253.85 2228.87 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
76. TMSB4X ENSGALG00000026383 249.37 2189.54 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
77. GAPDH ENSGALG00000014442 246.38 2163.28 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
78. H3-IX H3-IX 246.38 2163.28
79. CRHOA CRHOA 243.40 2137.12
80. EIF1 ENSGALG00000028517 243.40 2137.12 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
81. MT-CO1 MT-CO1 240.41 2110.87
82. HNRNPDL ENSGALG00000023199 235.93 2071.53 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
83. RPL37A ENSGALG00000011472 235.93 2071.53 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
84. EEF1D 232.94 2045.28 eukaryotic translation elongation factor 1 delta, transcript variant X13
85. FKBP4 ENSGALG00000014331 232.94 2045.28 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
86. SEC61G ENSGALG00000037863 229.96 2019.11 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
87. RPS25 ENSGALG00000007699 228.46 2005.94 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
88. RPL5 ENSGALG00000005922 225.48 1979.78 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
89. RPS3 ENSGALG00000017330 225.48 1979.78 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
90. HSPA8 ENSGALG00000006512 222.49 1953.52 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
91. HBG1 HBG1 215.02 1887.93
92. RPLP2 ENSGALG00000034811 213.53 1874.85 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
93. GPC4 ENSGALG00000006080 210.54 1848.60 glypican 4 [Source:HGNC Symbol;Acc:HGNC:4452]
94. RPS6 ENSGALG00000015082 204.57 1796.18 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
95. TCP1 ENSGALG00000011637 203.08 1783.10 t-complex 1 [Source:NCBI gene;Acc:421586]
96. MDK ENSGALG00000008367 201.59 1770.02 midkine [Source:NCBI gene;Acc:423196]
97. ENSGALG00000028992 ENSGALG00000028992 198.60 1743.76
98. NDUFB9 ENSGALG00000042242 192.63 1691.34 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
99. SLC25A6_1 ENSGALG00000016691 188.15 1652.01 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
100. RPL6 ENSGALG00000004818 186.65 1638.84 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA