Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s48.

Sample reads: 113,761. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4113.02 36156.35
2. EEF1A EEF1A 1356.49 11924.51
3. RPL35A ENSGALG00000007611, ENSGALG00000041230 1088.92 9572.38 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
4. RPLP1 ENSGALG00000030878 1080.63 9499.50 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
5. CIRBP ENSGALG00000030918 1001.81 8806.62 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
6. RPL23A ENSGALG00000003966 835.88 7347.98 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
7. RPS23 ENSGALG00000015617 798.54 7019.73 ribosomal protein S23
8. RPS21 ENSGALG00000005338 748.77 6582.22 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
9. RPS8 ENSGALG00000010124 682.39 5998.69 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
10. RPL27A ENSGALG00000005948 676.17 5944.01 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
11. MT-ATP6 MT-ATP6 669.95 5889.33
12. MT-ND5 MT-ND5 636.76 5597.57
13. RPS10 ENSGALG00000002813 599.43 5269.41 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
14. RPL27 ENSGALG00000002837 597.35 5251.13 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
15. HBG1 HBG1 591.13 5196.45
16. RPS12 ENSGALG00000013990 582.83 5123.49 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
17. gga-mir-3527 gga-mir-3527 568.32 4995.93
18. RPL19 ENSGALG00000001658 564.17 4959.45 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
19. gga-mir-3533 ENSGALG00000027736 553.80 4868.29 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
20. RPL4 ENSGALG00000007711 539.28 4740.65 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
21. RPL29 ENSGALG00000026978 537.20 4722.37 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
22. RPL13 ENSGALG00000006179 516.46 4540.05 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
23. RPL36 ENSGALG00000000474 512.31 4503.57 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
24. RPL35 ENSGALG00000035677 477.05 4193.61 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
25. RPL14 ENSGALG00000043379 474.98 4175.41 ribosomal protein L14
26. RPS15A ENSGALG00000006771 474.98 4175.41 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
27. RPL15 ENSGALG00000011290 441.79 3883.65 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
28. RPL26 RPL26 439.72 3865.45
29. SNRPD1 ENSGALG00000041334 435.57 3828.97 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
30. RPS16 ENSGALG00000026490 433.50 3810.77 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
31. TXN ENSGALG00000015704 431.42 3792.49 thioredoxin [Source:NCBI gene;Acc:396437]
32. RPL7A ENSGALG00000003197 427.27 3756.01 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
33. HMGN5 ENSGALG00000007131 416.90 3664.85 high mobility group nucleosome binding domain 5, transcript variant X1
34. RPS2 ENSGALG00000005490 416.90 3664.85 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
35. RPS27A ENSGALG00000036790 414.83 3646.65 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
36. RPL8 ENSGALG00000016232 410.68 3610.17 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
37. RPL32 ENSGALG00000027142 404.46 3555.49 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
38. RPS6 ENSGALG00000015082 398.24 3500.81 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
39. RPLP0 ENSGALG00000023294 394.09 3464.33 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
40. RPS15 ENSGALG00000015195 394.09 3464.33 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
41. MDK ENSGALG00000008367 389.94 3427.85 midkine [Source:NCBI gene;Acc:423196]
42. RPL38 ENSGALG00000001465 387.86 3409.56 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
43. MT-ND4 MT-ND4 385.79 3391.37
44. RPL12 ENSGALG00000008806 385.79 3391.37 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
45. GAPDH ENSGALG00000014442 379.57 3336.69 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
46. RPS29 ENSGALG00000012229 379.57 3336.69 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
47. RPS11 ENSGALG00000017299 373.35 3282.01 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
48. TCEB3 ENSGALG00000034625 369.20 3245.53 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
49. RPL37A ENSGALG00000011472 358.83 3154.37 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
50. RAN ENSGALG00000002569 354.68 3117.89 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
51. MT-CYB MT-CYB 350.53 3081.41
52. NME2 ENSGALG00000002932 350.53 3081.41 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
53. RPL23 ENSGALG00000001634 350.53 3081.41 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
54. RPSA 340.16 2990.25 ribosomal protein SA
55. RPS7 ENSGALG00000016392 336.01 2953.77 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
56. GNB2L1 ENSGALG00000000122 323.57 2844.41 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
57. RPL18A 323.57 2844.41 ribosomal protein L18a
58. HBZ ENSGALG00000023740 317.34 2789.64 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
59. RPL21 ENSGALG00000027035 315.27 2771.45 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
60. ANP32B ENSGALG00000037483 313.20 2753.25 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
61. RPS3A ENSGALG00000010077 313.20 2753.25 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
62. RPL7 ENSGALG00000035252 306.97 2698.48 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
63. SET ENSGALG00000004701 306.97 2698.48 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
64. RPL36AL ENSGALG00000004952 304.90 2680.29 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
65. MT-CO1 MT-CO1 300.75 2643.81
66. TMSB4X ENSGALG00000026383 294.53 2589.13 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
67. PRDX1 ENSGALG00000010243 290.38 2552.65 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
68. RPLP2 ENSGALG00000034811 290.38 2552.65 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
69. ATP5G3 286.23 2516.16 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
70. ENSGALG00000002696 ENSGALG00000002696 286.23 2516.16
71. RPL24 ENSGALG00000015339 284.16 2497.97 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
72. RPS4 RPS4 284.16 2497.97
73. RPS13 ENSGALG00000006096 277.94 2443.29 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
74. PPIA ENSGALG00000028600 273.79 2406.81 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
75. RPL37 ENSGALG00000014833 271.71 2388.52 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
76. HSPA8 ENSGALG00000006512 259.27 2279.17 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
77. SFPQ ENSGALG00000002514 259.27 2279.17 splicing factor proline and glutamine rich [Source:HGNC Symbol;Acc:HGNC:10774]
78. PHB2 ENSGALG00000014567 257.19 2260.88 prohibitin 2 [Source:NCBI gene;Acc:771124]
79. SEC61G ENSGALG00000037863 250.97 2206.20 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
80. RPS14 ENSGALG00000004588 248.90 2188.01 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
81. SLC25A6_1 ENSGALG00000016691 248.90 2188.01 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
82. ENSGALG00000028992 ENSGALG00000028992 246.82 2169.72
83. HBE 246.82 2169.72 hemoglobin subunit epsilon
84. RPL5 ENSGALG00000005922 236.45 2078.56 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
85. EIF4EBP1 ENSGALG00000003205 234.38 2060.37 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
86. RPL31 ENSGALG00000016775 234.38 2060.37 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
87. LDHB ENSGALG00000035836 226.08 1987.40 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
88. UBB ENSGALG00000004509 221.93 1950.92 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
89. EEF1D 219.86 1932.72 eukaryotic translation elongation factor 1 delta, transcript variant X13
90. EIF5A2 ENSGALG00000009309 219.86 1932.72 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
91. RPL6 ENSGALG00000004818 217.78 1914.44 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
92. RPS20 ENSGALG00000014432 215.71 1896.24 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
93. EIF4G2 ENSGALG00000005587 207.41 1823.28 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
94. MT-ND3 MT-ND3 207.41 1823.28
95. STMN1 ENSGALG00000001475 207.41 1823.28 stathmin 1 [Source:NCBI gene;Acc:396057]
96. NUCKS1 ENSGALG00000000708 205.34 1805.08 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
97. RPL10A ENSGALG00000002644 199.12 1750.41 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
98. ENO1 ENSGALG00000002377 197.04 1732.12 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
99. H3-IX H3-IX 197.04 1732.12
100. CRHOA CRHOA 192.90 1695.73
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA