Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s43.

Sample reads: 113,687. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4821.88 42415.71
2. HBG1 HBG1 1845.19 16231.23
3. HBZ ENSGALG00000023740 1479.44 13013.91 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
4. MT-ATP6 MT-ATP6 1165.74 10254.44
5. RPLP0 ENSGALG00000023294 1021.91 8989.24 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
6. HBE 969.86 8531.38 hemoglobin subunit epsilon
7. EEF1A EEF1A 960.27 8447.02
8. gga-mir-3533 ENSGALG00000027736 887.66 7808.31 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. CIRBP ENSGALG00000030918 863.01 7591.47 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
10. RPS10 ENSGALG00000002813 783.56 6892.59 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
11. RPL35A ENSGALG00000007611, ENSGALG00000041230 780.82 6868.49 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
12. RPL23A ENSGALG00000003966 757.53 6663.62 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
13. MT-ND5 MT-ND5 756.16 6651.57
14. RPLP1 ENSGALG00000030878 724.65 6374.39 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
15. RPL15 ENSGALG00000011290 693.15 6097.30 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
16. GAPDH ENSGALG00000014442 679.45 5976.79 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
17. SNRPD1 ENSGALG00000041334 638.35 5615.25 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
18. RPS23 ENSGALG00000015617 627.39 5518.84 ribosomal protein S23
19. RPL4 ENSGALG00000007711 623.28 5482.69 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
20. RPS12 ENSGALG00000013990 563.01 4952.52 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
21. RPSA 563.01 4952.52 ribosomal protein SA
22. RPS29 ENSGALG00000012229 556.16 4892.27 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
23. MDK ENSGALG00000008367 535.61 4711.50 midkine [Source:NCBI gene;Acc:423196]
24. PPIA ENSGALG00000028600 523.28 4603.04 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
25. RPS15 ENSGALG00000015195 509.58 4482.52 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
26. RPL13 ENSGALG00000006179 504.11 4434.41 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
27. RPL27A ENSGALG00000005948 501.37 4410.31 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
28. RPS21 ENSGALG00000005338 494.52 4350.05 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
29. RPS6 ENSGALG00000015082 478.08 4205.43 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
30. RPS8 ENSGALG00000010124 475.34 4181.33 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
31. RPL8 ENSGALG00000016232 467.12 4109.02 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
32. RPL29 ENSGALG00000026978 458.90 4036.72 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
33. RPL38 ENSGALG00000001465 454.79 4000.56 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
34. RPS11 ENSGALG00000017299 452.05 3976.46 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
35. ENSGALG00000028649 ENSGALG00000028649 441.09 3880.05
36. RPL19 ENSGALG00000001658 436.98 3843.90 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
37. MT-CYB MT-CYB 431.50 3795.69
38. RPL12 ENSGALG00000008806 426.02 3747.49 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
39. RPL7A ENSGALG00000003197 423.28 3723.39 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
40. MT-CO1 MT-CO1 417.80 3675.18
41. MT-ND4 MT-ND4 406.85 3578.86
42. gga-mir-3527 gga-mir-3527 404.11 3554.76
43. RPS3A ENSGALG00000010077 386.30 3398.09 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
44. RPS4 RPS4 384.93 3386.04
45. RPL26 RPL26 382.19 3361.94
46. RPS2 ENSGALG00000005490 380.82 3349.89 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
47. RPS27A ENSGALG00000036790 379.45 3337.84 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
48. RPL35 ENSGALG00000035677 376.71 3313.73 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
49. RPL32 ENSGALG00000027142 367.12 3229.37 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
50. RPS28 ENSGALG00000024398 364.38 3205.27 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
51. TXN ENSGALG00000015704 360.27 3169.12 thioredoxin [Source:NCBI gene;Acc:396437]
52. RPL37 ENSGALG00000014833 354.79 3120.91 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
53. RPS15A ENSGALG00000006771 350.68 3084.76 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
54. HMGN5 ENSGALG00000007131 349.31 3072.71 high mobility group nucleosome binding domain 5, transcript variant X1
55. RPL27 ENSGALG00000002837 332.87 2928.09 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
56. RPS16 ENSGALG00000026490 321.92 2831.77 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
57. GNB2L1 ENSGALG00000000122 320.55 2819.72 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
58. RPL37A ENSGALG00000011472 315.07 2771.52 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
59. RPL36 ENSGALG00000000474 313.70 2759.46 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
60. RPL6 ENSGALG00000004818 309.59 2723.31 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
61. RPL21 ENSGALG00000027035 300.00 2638.95 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
62. ANP32B ENSGALG00000037483 289.04 2542.54 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
63. ALDOC ENSGALG00000026077 284.93 2506.39 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
64. RPL14 ENSGALG00000043379 283.56 2494.34 ribosomal protein L14
65. RPS14 ENSGALG00000004588 282.19 2482.29 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
66. RPS20 ENSGALG00000014432 276.71 2434.08 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
67. TMSB4X ENSGALG00000026383 275.34 2422.03 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
68. RPL24 ENSGALG00000015339 267.12 2349.72 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
69. RPS7 ENSGALG00000016392 267.12 2349.72 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
70. NME2 ENSGALG00000002932 264.38 2325.62 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
71. RPL18A 261.64 2301.52 ribosomal protein L18a
72. UBB ENSGALG00000004509 253.42 2229.21 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
73. MT-ND1 MT-ND1 250.68 2205.11
74. PHB2 ENSGALG00000014567 250.68 2205.11 prohibitin 2 [Source:NCBI gene;Acc:771124]
75. EIF5A2 ENSGALG00000009309 245.20 2156.90 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
76. ATP5G3 242.46 2132.80 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
77. MT-ND3 MT-ND3 241.09 2120.75
78. RPLP2 ENSGALG00000034811 239.72 2108.70 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
79. PRDX1 ENSGALG00000010243 235.61 2072.55 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
80. RPL23 ENSGALG00000001634 235.61 2072.55 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
81. RPL36AL ENSGALG00000004952 230.14 2024.43 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
82. STMN1 ENSGALG00000001475 226.03 1988.27 stathmin 1 [Source:NCBI gene;Acc:396057]
83. EEF1D 224.66 1976.22 eukaryotic translation elongation factor 1 delta, transcript variant X13
84. RPS25 ENSGALG00000007699 224.66 1976.22 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
85. ENO1 ENSGALG00000002377 223.29 1964.17 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
86. TCEB3 ENSGALG00000034625 223.29 1964.17 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
87. RPL5 ENSGALG00000005922 217.81 1915.97 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
88. ENSGALG00000022570 ENSGALG00000022570 216.44 1903.92
89. SLC25A6_1 ENSGALG00000016691 216.44 1903.92 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
90. LDHB ENSGALG00000035836 213.70 1879.81 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
91. RAN ENSGALG00000002569 213.70 1879.81 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
92. CRHOA CRHOA 210.96 1855.71
93. H3-IX H3-IX 210.96 1855.71
94. SET ENSGALG00000004701 210.96 1855.71 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
95. SEC61G ENSGALG00000037863 205.48 1807.51 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
96. ENSGALG00000002696 ENSGALG00000002696 202.74 1783.40
97. ENSGALG00000028992 ENSGALG00000028992 202.74 1783.40
98. RPL10A ENSGALG00000002644 201.37 1771.35 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
99. RPS13 ENSGALG00000006096 201.37 1771.35 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
100. HNRNPDL ENSGALG00000023199 194.52 1711.10 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA