Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s4.

Sample reads: 113,842. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3119.32 27401.78
2. CIRBP ENSGALG00000030918 1359.39 11941.61 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
3. EEF1A EEF1A 1191.56 10467.30
4. RPLP1 ENSGALG00000030878 1024.86 9002.92 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
5. RPL35A ENSGALG00000007611, ENSGALG00000041230 1010.31 8875.10 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
6. RPL23A ENSGALG00000003966 934.23 8206.78 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
7. RPS10 ENSGALG00000002813 919.69 8079.05 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
8. RPS23 ENSGALG00000015617 861.51 7567.97 ribosomal protein S23
9. RPL15 ENSGALG00000011290 770.88 6771.82 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
10. RPS21 ENSGALG00000005338 718.29 6309.84 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
11. gga-mir-3533 ENSGALG00000027736 718.29 6309.84 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. RPL4 ENSGALG00000007711 704.87 6191.96 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
13. RPL35 ENSGALG00000035677 691.44 6073.98 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
14. RPS15 ENSGALG00000015195 661.23 5808.60 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
15. RPL13 ENSGALG00000006179 608.65 5346.71 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
16. RPS8 ENSGALG00000010124 606.41 5327.03 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
17. SNRPD1 ENSGALG00000041334 606.41 5327.03 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
18. RPL29 ENSGALG00000026978 563.89 4953.51 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
19. MT-ATP6 MT-ATP6 551.59 4845.46
20. GAPDH ENSGALG00000014442 526.97 4629.19 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
21. RPL7A ENSGALG00000003197 522.50 4589.92 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
22. RPL27 ENSGALG00000002837 520.26 4570.24 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
23. RPLP0 ENSGALG00000023294 510.19 4481.78 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
24. RPSA 507.95 4462.11 ribosomal protein SA
25. TCEB3 ENSGALG00000034625 507.95 4462.11 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
26. RPL27A ENSGALG00000005948 504.60 4432.68 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
27. MT-ND5 MT-ND5 503.48 4422.84
28. RPS12 ENSGALG00000013990 500.12 4393.32 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
29. RPS15A ENSGALG00000006771 488.93 4295.02 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
30. RPL19 ENSGALG00000001658 475.51 4177.13 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
31. RPS11 ENSGALG00000017299 462.08 4059.16 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
32. PPIA ENSGALG00000028600 439.70 3862.56 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
33. RPS2 ENSGALG00000005490 438.58 3852.72 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
34. RPS27A ENSGALG00000036790 437.47 3842.97 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
35. RPL26 RPL26 436.35 3833.13
36. RPL36 ENSGALG00000000474 435.23 3823.29 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
37. gga-mir-3527 gga-mir-3527 428.52 3764.35
38. TXN ENSGALG00000015704 421.80 3705.32 thioredoxin [Source:NCBI gene;Acc:396437]
39. RPS16 ENSGALG00000026490 418.45 3675.89 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
40. RPL38 ENSGALG00000001465 412.85 3626.70 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
41. NME2 ENSGALG00000002932 401.66 3528.40 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
42. RPL12 ENSGALG00000008806 399.43 3508.81 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
43. GNB2L1 ENSGALG00000000122 396.07 3479.29 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
44. RPL32 ENSGALG00000027142 396.07 3479.29 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
45. RPS3A ENSGALG00000010077 393.83 3459.61 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
46. RPL8 ENSGALG00000016232 383.76 3371.15 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
47. EIF5A2 ENSGALG00000009309 377.05 3312.21 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
48. MT-ND4 MT-ND4 375.93 3302.37
49. RPS29 ENSGALG00000012229 363.62 3194.23 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
50. RPL23 ENSGALG00000001634 355.79 3125.45 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
51. RPL24 ENSGALG00000015339 355.79 3125.45 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
52. RPS17 ENSGALG00000002157 342.36 3007.47 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
53. ATP5G3 335.65 2948.53 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
54. LDHB ENSGALG00000035836 335.65 2948.53 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
55. RPL6 ENSGALG00000004818 323.34 2840.39 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
56. MT-CYB MT-CYB 316.63 2781.45
57. RPS4 RPS4 316.63 2781.45
58. TMSB4X ENSGALG00000026383 309.92 2722.50 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
59. RPL14 ENSGALG00000043379 300.97 2643.88 ribosomal protein L14
60. RPS14 ENSGALG00000004588 298.73 2624.20 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
61. RPS13 ENSGALG00000006096 296.49 2604.53 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
62. RPL21 ENSGALG00000027035 294.25 2584.85 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
63. RPL37A ENSGALG00000011472 290.90 2555.42 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
64. RPL36AL ENSGALG00000004952 289.78 2545.58 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
65. RPL7 ENSGALG00000035252 289.78 2545.58 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
66. ANP32B ENSGALG00000037483 287.54 2525.91 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
67. RPS6 ENSGALG00000015082 287.54 2525.91 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
68. RPL37 ENSGALG00000014833 285.30 2506.23 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
69. PRDX1 ENSGALG00000010243 283.07 2486.64 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
70. RPS7 ENSGALG00000016392 283.07 2486.64 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
71. EIF4G2 ENSGALG00000005587 274.12 2408.02 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
72. RPL18A 273.00 2398.18 ribosomal protein L18a
73. RPL31 ENSGALG00000016775 273.00 2398.18 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
74. MT-ND3 MT-ND3 271.88 2388.34
75. FKBP4 ENSGALG00000014331 269.64 2368.66 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
76. MDK ENSGALG00000008367 261.81 2299.88 midkine [Source:NCBI gene;Acc:423196]
77. H3-IX H3-IX 258.45 2270.36
78. RAN ENSGALG00000002569 258.45 2270.36 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
79. ALDOC ENSGALG00000026077 256.21 2250.69 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
80. STMN1 ENSGALG00000001475 256.21 2250.69 stathmin 1 [Source:NCBI gene;Acc:396057]
81. ENSGALG00000002696 ENSGALG00000002696 251.74 2211.42
82. RPS25 ENSGALG00000007699 249.50 2191.74 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
83. ENO1 ENSGALG00000002377 241.67 2122.96 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
84. SET ENSGALG00000004701 236.08 2073.85 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
85. CCT4 ENSGALG00000008812 233.84 2054.18 chaperonin containing TCP1 subunit 4 [Source:NCBI gene;Acc:395414]
86. GPC4 ENSGALG00000006080 232.72 2044.34 glypican 4 [Source:HGNC Symbol;Acc:HGNC:4452]
87. RPL5 ENSGALG00000005922 232.72 2044.34 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
88. HSPA8 ENSGALG00000006512 223.77 1965.72 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
89. SLC25A6_1 ENSGALG00000016691 223.77 1965.72 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
90. ENSGALG00000028649 ENSGALG00000028649 219.29 1926.36
91. RPS20 ENSGALG00000014432 219.29 1926.36 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
92. MT-CO1 MT-CO1 215.94 1896.93
93. SEC61G ENSGALG00000037863 213.70 1877.26 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
94. HNRNPDL ENSGALG00000023199 212.58 1867.42 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
95. CRHOA CRHOA 204.75 1798.63
96. EEF1D 204.75 1798.63 eukaryotic translation elongation factor 1 delta, transcript variant X13
97. EIF1 ENSGALG00000028517 204.75 1798.63 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
98. UBB ENSGALG00000004509 202.51 1778.96 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
99. HBG1 HBG1 200.27 1759.28
100. NDUFB9 ENSGALG00000042242 200.27 1759.28 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA