Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s3.

Sample reads: 113,911. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 2764.89 24273.47
2. CIRBP ENSGALG00000030918 1461.64 12832.00 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
3. EEF1A EEF1A 1224.83 10753.00
4. RPLP1 ENSGALG00000030878 1141.71 10023.28 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
5. RPL35A ENSGALG00000007611, ENSGALG00000041230 1108.78 9734.18 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
6. RPL23A ENSGALG00000003966 944.11 8288.51 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
7. RPS23 ENSGALG00000015617 937.83 8233.38 ribosomal protein S23
8. RPS10 ENSGALG00000002813 931.56 8178.33 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
9. RPS15 ENSGALG00000015195 826.49 7255.90 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
10. RPS21 ENSGALG00000005338 787.28 6911.67 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
11. RPL35 ENSGALG00000035677 768.46 6746.45 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
12. RPL15 ENSGALG00000011290 763.75 6705.10 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
13. RPL4 ENSGALG00000007711 751.21 6595.01 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
14. RPS8 ENSGALG00000010124 737.09 6471.05 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
15. RPL13 ENSGALG00000006179 732.39 6429.78 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
16. RPSA 608.49 5342.04 ribosomal protein SA
17. gga-mir-3533 ENSGALG00000027736 597.52 5245.74 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
18. RPL29 ENSGALG00000026978 591.24 5190.60 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
19. RPL27 ENSGALG00000002837 589.68 5176.91 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
20. SNRPD1 ENSGALG00000041334 589.68 5176.91 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
21. RPS15A ENSGALG00000006771 578.70 5080.51 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
22. RPL27A ENSGALG00000005948 566.15 4970.33 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
23. GAPDH ENSGALG00000014442 563.01 4942.77 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
24. RPS11 ENSGALG00000017299 515.97 4529.79 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
25. MT-ND5 MT-ND5 501.85 4405.83
26. RPL32 ENSGALG00000027142 497.15 4364.57 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
27. MT-ATP6 MT-ATP6 492.44 4323.22
28. RPL19 ENSGALG00000001658 490.87 4309.44 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
29. gga-mir-3527 gga-mir-3527 481.46 4226.82
30. TXN ENSGALG00000015704 453.23 3978.99 thioredoxin [Source:NCBI gene;Acc:396437]
31. RPL7A ENSGALG00000003197 451.67 3965.29 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
32. RPS2 ENSGALG00000005490 429.71 3772.50 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
33. TCEB3 ENSGALG00000034625 429.71 3772.50 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
34. RPS29 ENSGALG00000012229 425.01 3731.24 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
35. RPL14 ENSGALG00000043379 421.87 3703.67 ribosomal protein L14
36. RPL36 ENSGALG00000000474 418.73 3676.11 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
37. RPS27A ENSGALG00000036790 415.60 3648.63 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
38. RPS16 ENSGALG00000026490 409.32 3593.49 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
39. RPS12 ENSGALG00000013990 406.19 3566.01 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
40. RPS3A ENSGALG00000010077 406.19 3566.01 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
41. RPL23 ENSGALG00000001634 404.62 3552.23 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
42. RPS17 ENSGALG00000002157 404.62 3552.23 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
43. RPL38 ENSGALG00000001465 385.80 3387.01 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
44. MT-ND4 MT-ND4 381.09 3345.66
45. RPL18A 381.09 3345.66 ribosomal protein L18a
46. PPIA ENSGALG00000028600 379.53 3331.96 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
47. RPL37 ENSGALG00000014833 377.96 3318.18 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
48. RPL26 RPL26 373.25 3276.83
49. RPS14 ENSGALG00000004588 371.68 3263.05 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
50. RPL12 ENSGALG00000008806 360.71 3166.74 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
51. RPL8 ENSGALG00000016232 359.14 3152.95 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
52. GNB2L1 ENSGALG00000000122 354.43 3111.60 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
53. RPLP0 ENSGALG00000023294 352.86 3097.82 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
54. RPS4 RPS4 352.86 3097.82
55. EIF5A2 ENSGALG00000009309 351.30 3084.13 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
56. ALDOC ENSGALG00000026077 332.48 2918.90 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
57. NME2 ENSGALG00000002932 330.91 2905.12 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
58. RPL31 ENSGALG00000016775 327.77 2877.55 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
59. MT-CYB MT-CYB 326.20 2863.77
60. RPL24 ENSGALG00000015339 324.64 2850.07 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
61. TMSB4X ENSGALG00000026383 324.64 2850.07 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
62. RPL6 ENSGALG00000004818 313.66 2753.68 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
63. RPS7 ENSGALG00000016392 310.52 2726.11 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
64. ENO1 ENSGALG00000002377 308.95 2712.33 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
65. ATP5G3 307.38 2698.54 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
66. RPL37A ENSGALG00000011472 304.25 2671.07 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
67. MT-ND3 MT-ND3 301.11 2643.50
68. RPL21 ENSGALG00000027035 297.97 2615.93 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
69. LDHB ENSGALG00000035836 296.41 2602.24 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
70. RPL7 ENSGALG00000035252 294.84 2588.45 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
71. RPL5 ENSGALG00000005922 293.27 2574.67 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
72. FKBP4 ENSGALG00000014331 288.56 2533.32 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
73. RPS13 ENSGALG00000006096 287.00 2519.62 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
74. RPL36AL ENSGALG00000004952 285.43 2505.84 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
75. RAN ENSGALG00000002569 280.72 2464.49 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
76. ENSGALG00000002696 ENSGALG00000002696 274.45 2409.45
77. PRDX1 ENSGALG00000010243 269.75 2368.18 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
78. H3-IX H3-IX 263.47 2313.05
79. MDK ENSGALG00000008367 258.77 2271.79 midkine [Source:NCBI gene;Acc:423196]
80. MT-CO1 MT-CO1 254.06 2230.44
81. EIF4G2 ENSGALG00000005587 252.49 2216.66 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
82. SLC25A6_1 ENSGALG00000016691 252.49 2216.66 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
83. ANP32B ENSGALG00000037483 249.36 2189.18 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
84. SSR1 ENSGALG00000012798 246.22 2161.61 signal sequence receptor subunit 1 [Source:NCBI gene;Acc:420871]
85. HNRNPDL ENSGALG00000023199 232.11 2037.74 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
86. SET ENSGALG00000004701 221.13 1941.34 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
87. RPS6 ENSGALG00000015082 219.56 1927.56 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
88. CRHOA CRHOA 213.29 1872.51
89. HSPA8 ENSGALG00000006512 211.72 1858.73 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
90. EEF1D 207.01 1817.38 eukaryotic translation elongation factor 1 delta, transcript variant X13
91. MT-ND1 MT-ND1 207.01 1817.38
92. EIF1 ENSGALG00000028517 202.31 1776.12 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
93. STMN1 ENSGALG00000001475 200.74 1762.33 stathmin 1 [Source:NCBI gene;Acc:396057]
94. ENSGALG00000028649 ENSGALG00000028649 199.17 1748.55
95. RPS3 ENSGALG00000017330 196.04 1721.07 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
96. RPS25 ENSGALG00000007699 194.47 1707.29 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
97. SEC61G ENSGALG00000037863 189.76 1665.94 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
98. DDX5 ENSGALG00000003532 181.92 1597.11 DEAD-box helicase 5 [Source:NCBI gene;Acc:395629]
99. CCT4 ENSGALG00000008812 175.65 1542.06 chaperonin containing TCP1 subunit 4 [Source:NCBI gene;Acc:395414]
100. NCL ENSGALG00000032930 175.65 1542.06 nucleolin [Source:NCBI gene;Acc:396201]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA