Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s2.

Sample reads: 113,825. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3274.90 28772.50
2. CIRBP ENSGALG00000030918 1291.47 11346.55 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
3. RPL35A ENSGALG00000007611, ENSGALG00000041230 1283.76 11278.81 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
4. RPLP1 ENSGALG00000030878 970.91 8530.19 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
5. EEF1A EEF1A 918.51 8069.81
6. RPS10 ENSGALG00000002813 906.18 7961.48 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
7. RPL15 ENSGALG00000011290 844.54 7419.93 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
8. RPS23 ENSGALG00000015617 836.83 7352.19 ribosomal protein S23
9. gga-mir-3533 ENSGALG00000027736 809.09 7108.47 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. RPL23A ENSGALG00000003966 762.86 6702.31 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
11. RPL4 ENSGALG00000007711 716.63 6296.14 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
12. RPS15 ENSGALG00000015195 704.30 6187.81 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
13. RPS21 ENSGALG00000005338 698.13 6133.61 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
14. GAPDH ENSGALG00000014442 664.23 5835.77 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
15. SNRPD1 ENSGALG00000041334 645.73 5673.23 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
16. RPL13 ENSGALG00000006179 616.45 5415.98 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
17. RPL35 ENSGALG00000035677 599.50 5267.07 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
18. MT-ATP6 MT-ATP6 597.96 5253.54
19. RPL27A ENSGALG00000005948 584.09 5131.68 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
20. RPL19 ENSGALG00000001658 574.84 5050.41 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
21. RPL29 ENSGALG00000026978 525.53 4617.18 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
22. MT-ND5 MT-ND5 519.36 4562.97
23. RPL27 ENSGALG00000002837 513.20 4508.85 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
24. RPSA 502.41 4414.06 ribosomal protein SA
25. RPL7A ENSGALG00000003197 500.87 4400.53 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
26. RPS15A ENSGALG00000006771 493.16 4332.79 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
27. RPLP0 ENSGALG00000023294 485.46 4265.14 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
28. RPS8 ENSGALG00000010124 480.83 4224.46 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
29. RPS2 ENSGALG00000005490 470.04 4129.66 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
30. RPS3A ENSGALG00000010077 456.17 4007.80 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
31. gga-mir-3527 gga-mir-3527 445.39 3913.09
32. RPS29 ENSGALG00000012229 443.85 3899.56 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
33. RPL12 ENSGALG00000008806 416.11 3655.84 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
34. RPS4 RPS4 414.56 3642.23
35. TXN ENSGALG00000015704 413.02 3628.70 thioredoxin [Source:NCBI gene;Acc:396437]
36. RPL32 ENSGALG00000027142 409.94 3601.64 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
37. RPS12 ENSGALG00000013990 409.94 3601.64 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
38. TCEB3 ENSGALG00000034625 396.07 3479.78 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
39. RPL36 ENSGALG00000000474 392.99 3452.72 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
40. RPL8 ENSGALG00000016232 388.36 3412.04 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
41. PPIA ENSGALG00000028600 382.20 3357.92 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
42. RPL6 ENSGALG00000004818 380.66 3344.39 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
43. RPS11 ENSGALG00000017299 369.87 3249.59 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
44. EIF5A2 ENSGALG00000009309 365.25 3209.00 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
45. RPS16 ENSGALG00000026490 354.46 3114.20 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
46. RPS27A ENSGALG00000036790 354.46 3114.20 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
47. RPL23 ENSGALG00000001634 351.38 3087.14 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
48. RPL24 ENSGALG00000015339 351.38 3087.14 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
49. GNB2L1 ENSGALG00000000122 348.30 3060.08 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
50. RPL26 RPL26 345.21 3032.93
51. RPL38 ENSGALG00000001465 345.21 3032.93 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
52. ENO1 ENSGALG00000002377 334.43 2938.22 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
53. RPL21 ENSGALG00000027035 332.88 2924.61 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
54. MT-ND4 MT-ND4 325.18 2856.95
55. LDHB ENSGALG00000035836 320.55 2816.28 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
56. ANP32B ENSGALG00000037483 319.01 2802.75 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
57. ATP5G3 317.47 2789.22 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
58. RPL37A ENSGALG00000011472 315.93 2775.69 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
59. RPS14 ENSGALG00000004588 315.93 2775.69 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
60. NME2 ENSGALG00000002932 314.39 2762.16 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
61. RPL37 ENSGALG00000014833 309.77 2721.57 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
62. RPS6 ENSGALG00000015082 305.14 2680.89 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
63. RPL36AL ENSGALG00000004952 302.06 2653.83 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
64. RPS13 ENSGALG00000006096 300.52 2640.30 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
65. HMGN5 ENSGALG00000007131 298.98 2626.77 high mobility group nucleosome binding domain 5, transcript variant X1
66. MDK ENSGALG00000008367 298.98 2626.77 midkine [Source:NCBI gene;Acc:423196]
67. TMSB4X ENSGALG00000026383 295.90 2599.71 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
68. EIF4G2 ENSGALG00000005587 294.36 2586.18 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
69. MT-CYB MT-CYB 291.27 2559.03
70. RPL18A 288.19 2531.97 ribosomal protein L18a
71. RPS17 ENSGALG00000002157 280.49 2464.32 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
72. RPL7 ENSGALG00000035252 272.78 2396.58 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
73. RPL14 ENSGALG00000043379 266.62 2342.46 ribosomal protein L14
74. RPS7 ENSGALG00000016392 266.62 2342.46 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
75. ALDOC ENSGALG00000026077 265.07 2328.84 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
76. RPL31 ENSGALG00000016775 265.07 2328.84 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
77. ENSGALG00000002696 ENSGALG00000002696 258.91 2274.72
78. PRDX1 ENSGALG00000010243 257.37 2261.19 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
79. CRHOA CRHOA 254.29 2234.13
80. FKBP4 ENSGALG00000014331 252.75 2220.60 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
81. MT-CO1 MT-CO1 243.50 2139.33
82. STMN1 ENSGALG00000001475 243.50 2139.33 stathmin 1 [Source:NCBI gene;Acc:396057]
83. SSR1 ENSGALG00000012798 241.96 2125.80 signal sequence receptor subunit 1 [Source:NCBI gene;Acc:420871]
84. HNRNPDL ENSGALG00000023199 240.42 2112.27 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
85. RAN ENSGALG00000002569 240.42 2112.27 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
86. HSPA8 ENSGALG00000006512 235.79 2071.60 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
87. PHB2 ENSGALG00000014567 234.25 2058.07 prohibitin 2 [Source:NCBI gene;Acc:771124]
88. SEC61G ENSGALG00000037863 226.55 1990.41 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
89. SLC25A6_1 ENSGALG00000016691 226.55 1990.41 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
90. MT-ND3 MT-ND3 225.00 1976.80
91. SET ENSGALG00000004701 220.38 1936.21 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
92. UBB ENSGALG00000004509 218.84 1922.68 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
93. PKM ENSGALG00000001992 214.22 1882.09 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
94. EIF1 ENSGALG00000028517 209.59 1841.41 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
95. ENSGALG00000028649 ENSGALG00000028649 208.05 1827.88
96. H3-IX H3-IX 208.05 1827.88
97. NDUFB9 ENSGALG00000042242 203.43 1787.29 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
98. RPL5 ENSGALG00000005922 200.35 1760.23 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
99. RPLP2 ENSGALG00000034811 200.35 1760.23 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
100. ID1 ENSGALG00000034661 198.81 1746.70 inhibitor of DNA binding 1, HLH protein [Source:NCBI gene;Acc:395282]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA