Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s87.

Sample reads: 235,401. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4909.00 20854.84
2. RPL35A ENSGALG00000007611, ENSGALG00000041230 3322.00 14112.81 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
3. RPS10 ENSGALG00000002813 3072.00 13050.74 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
4. RPS29 ENSGALG00000012229 2742.00 11648.80 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
5. gga-mir-3527 gga-mir-3527 2633.00 11185.74
6. RPS15 ENSGALG00000015195 2410.00 10238.37 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
7. EEF1A EEF1A 2195.00 9324.99
8. gga-mir-3533 ENSGALG00000027736 2195.00 9324.99 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. HBG1 HBG1 2127.00 9036.11
10. RPL4 ENSGALG00000007711 2031.00 8628.27 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
11. RPL23A ENSGALG00000003966 1971.00 8373.37 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
12. HBZ ENSGALG00000023740 1835.00 7795.61 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
13. RPL13 ENSGALG00000006179 1816.00 7714.89 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
14. RPLP0 ENSGALG00000023294 1812.00 7697.90 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
15. RPL29 ENSGALG00000026978 1722.00 7315.55 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
16. RPS21 ENSGALG00000005338 1719.00 7302.81 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
17. GAPDH ENSGALG00000014442 1694.00 7196.60 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
18. RPS4 RPS4 1655.00 7030.91
19. RPS8 ENSGALG00000010124 1627.00 6911.96 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
20. HBE 1604.00 6814.25 hemoglobin subunit epsilon
21. RPL24 ENSGALG00000015339 1570.00 6669.81 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
22. RPL19 ENSGALG00000001658 1496.00 6355.44 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
23. RPS2 ENSGALG00000005490 1484.00 6304.46 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
24. RPLP1 ENSGALG00000030878 1449.00 6155.77 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
25. RPS14 ENSGALG00000004588 1428.00 6066.55 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
26. MT-ND3 MT-ND3 1424.00 6049.56
27. RPL7A ENSGALG00000003197 1363.00 5790.42 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
28. RPL35 ENSGALG00000035677 1354.00 5752.18 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
29. RPL36 ENSGALG00000000474 1352.00 5743.68 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
30. RPS15A ENSGALG00000006771 1350.00 5735.19 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
31. RPSA 1328.00 5641.72 ribosomal protein SA
32. RPL18A 1321.00 5611.99 ribosomal protein L18a
33. RPL15 ENSGALG00000011290 1261.00 5357.09 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
34. RPL27 ENSGALG00000002837 1257.00 5340.10 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
35. RPL32 ENSGALG00000027142 1235.00 5246.63 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
36. RPL27A ENSGALG00000005948 1208.00 5131.93 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
37. RPL14 ENSGALG00000043379 1194.00 5072.45 ribosomal protein L14
38. PPIA ENSGALG00000028600 1171.00 4974.74 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
39. MT-ATP6 MT-ATP6 1167.00 4957.75
40. MT-ND5 MT-ND5 1121.00 4762.33
41. MT-ND1 MT-ND1 1102.00 4681.61
42. RPS23 ENSGALG00000015617 1007.00 4278.02 ribosomal protein S23
43. RPL36AL ENSGALG00000004952 979.00 4159.07 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
44. RPL12 ENSGALG00000008806 969.00 4116.59 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
45. RPL38 ENSGALG00000001465 964.00 4095.35 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
46. RPL7 ENSGALG00000035252 964.00 4095.35 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
47. RPS17 ENSGALG00000002157 964.00 4095.35 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
48. SNRPD1 ENSGALG00000041334 956.00 4061.36 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
49. RPS7 ENSGALG00000016392 944.00 4010.38 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
50. MT-ND4 MT-ND4 937.00 3980.64
51. RPS16 ENSGALG00000026490 917.00 3895.68 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
52. RPS11 ENSGALG00000017299 914.00 3882.93 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
53. RPL26 RPL26 889.00 3776.73
54. TMSB4X ENSGALG00000026383 868.00 3687.51 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
55. RPL6 ENSGALG00000004818 860.00 3653.53 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
56. TCEB3 ENSGALG00000034625 850.00 3611.04 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
57. GNB2L1 ENSGALG00000000122 815.00 3462.35 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
58. RPS3A ENSGALG00000010077 797.00 3385.88 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
59. PRDX1 ENSGALG00000010243 786.00 3339.15 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
60. RPS12 ENSGALG00000013990 769.00 3266.93 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
61. RPL23 ENSGALG00000001634 764.00 3245.69 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
62. RPS24 ENSGALG00000004871 750.00 3186.22 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
63. RPS27A ENSGALG00000036790 739.00 3139.48 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
64. RPL8 ENSGALG00000016232 730.00 3101.25 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
65. RPL5 ENSGALG00000005922 729.00 3097.00 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
66. NME2 ENSGALG00000002932 719.00 3054.52 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
67. CIRBP ENSGALG00000030918 710.00 3016.28 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
68. ENO1 ENSGALG00000002377 707.00 3003.54 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
69. RPS3 ENSGALG00000017330 702.00 2982.30 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
70. ANP32B ENSGALG00000037483 698.00 2965.30 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
71. RPS25 ENSGALG00000007699 688.00 2922.82 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
72. EEF1D 676.00 2871.84 eukaryotic translation elongation factor 1 delta, transcript variant X13
73. UBB ENSGALG00000004509 672.00 2854.85 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
74. RPL21 ENSGALG00000027035 663.00 2816.61 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
75. ENSGALG00000028992 ENSGALG00000028992 656.00 2786.88
76. STMN1 ENSGALG00000001475 655.00 2782.63 stathmin 1 [Source:NCBI gene;Acc:396057]
77. RPS13 ENSGALG00000006096 645.00 2740.15 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
78. MT-CYB MT-CYB 644.00 2735.90
79. RPL37A ENSGALG00000011472 641.00 2723.15 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
80. MDK ENSGALG00000008367 625.00 2655.18 midkine [Source:NCBI gene;Acc:423196]
81. RPS28 ENSGALG00000024398 606.00 2574.46 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
82. MT-CO1 MT-CO1 567.00 2408.78
83. RPL37 ENSGALG00000014833 547.00 2323.81 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
84. LDHB ENSGALG00000035836 543.00 2306.82 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
85. RPL31 ENSGALG00000016775 512.00 2175.12 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
86. FTH FTH 511.00 2170.87
87. ATP5G3 505.00 2145.38 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
88. CRHOA CRHOA 476.00 2022.18
89. RPS20 ENSGALG00000014432 476.00 2022.18 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
90. RPL10A ENSGALG00000002644 468.00 1988.20 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
91. DYL1 ENSGALG00000007153 423.00 1797.03 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
92. CHCHD2 ENSGALG00000002495 410.00 1741.80 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
93. ATP5L ENSGALG00000006899 395.00 1678.07 ATP synthase, H+ transporting, mitochondrial Fo complex subunit G
94. TXN ENSGALG00000015704 388.00 1648.34 thioredoxin [Source:NCBI gene;Acc:396437]
95. SLC25A6_1 ENSGALG00000016691 372.00 1580.36 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
96. ENSGALG00000028649 ENSGALG00000028649 367.00 1559.12
97. RPS6 ENSGALG00000015082 366.00 1554.87 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
98. ZNF593 ENSGALG00000000542 366.00 1554.87 zinc finger protein 593 [Source:NCBI gene;Acc:419549]
99. FKBP12 FKBP12 364.00 1546.38
100. RAN ENSGALG00000002569 364.00 1546.38 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA