Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s45.

Sample reads: 234,707. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4688.00 19974.86
2. RPL35A ENSGALG00000007611, ENSGALG00000041230 3032.00 12918.89 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
3. RPLP0 ENSGALG00000023294 2868.00 12220.12 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
4. RPS15 ENSGALG00000015195 2672.00 11384.99 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
5. HBZ ENSGALG00000023740 2578.00 10984.47 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
6. gga-mir-3533 ENSGALG00000027736 2506.00 10677.69 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. RPS10 ENSGALG00000002813 2462.00 10490.21 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
8. HBG1 HBG1 2345.00 9991.69
9. RPL13 ENSGALG00000006179 2191.00 9335.52 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
10. RPS29 ENSGALG00000012229 2182.00 9297.17 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
11. RPL4 ENSGALG00000007711 2102.00 8956.30 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
12. EEF1A EEF1A 1934.00 8240.48
13. RPS2 ENSGALG00000005490 1887.00 8040.22 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
14. RPL23A ENSGALG00000003966 1825.00 7776.05 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
15. RPL35 ENSGALG00000035677 1649.00 7026.14 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
16. RPS28 ENSGALG00000024398 1644.00 7004.84 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
17. gga-mir-3527 gga-mir-3527 1594.00 6791.79
18. RPS4 RPS4 1582.00 6740.66
19. RPS8 ENSGALG00000010124 1535.00 6540.40 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
20. GAPDH ENSGALG00000014442 1530.00 6519.10 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
21. HBE 1517.00 6463.71 hemoglobin subunit epsilon
22. RPS15A ENSGALG00000006771 1485.00 6327.36 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
23. RPL15 ENSGALG00000011290 1386.00 5905.54 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
24. RPLP1 ENSGALG00000030878 1386.00 5905.54 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
25. RPL27A ENSGALG00000005948 1376.00 5862.93 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
26. RPL19 ENSGALG00000001658 1354.00 5769.19 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
27. RPS14 ENSGALG00000004588 1344.00 5726.58 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
28. RPS21 ENSGALG00000005338 1334.00 5683.97 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
29. RPL7A ENSGALG00000003197 1277.00 5441.10 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
30. RPSA 1247.00 5313.28 ribosomal protein SA
31. RPL29 ENSGALG00000026978 1240.00 5283.45 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
32. RPL24 ENSGALG00000015339 1237.00 5270.67 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
33. RPL36 ENSGALG00000000474 1215.00 5176.93 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
34. RPL32 ENSGALG00000027142 1155.00 4921.28 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
35. RPL18A 1128.00 4806.24 ribosomal protein L18a
36. RPL38 ENSGALG00000001465 1128.00 4806.24 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
37. RPS12 ENSGALG00000013990 1106.00 4712.50 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
38. RPL26 RPL26 1103.00 4699.72
39. PPIA ENSGALG00000028600 1064.00 4533.54 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
40. RPL12 ENSGALG00000008806 1051.00 4478.15 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
41. RPL6 ENSGALG00000004818 1002.00 4269.37 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
42. MT-ND3 MT-ND3 979.00 4171.37
43. TMSB4X ENSGALG00000026383 977.00 4162.85 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
44. MT-ATP6 MT-ATP6 967.00 4120.24
45. RPS7 ENSGALG00000016392 952.00 4056.33 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
46. SNRPD1 ENSGALG00000041334 947.00 4035.02 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
47. RPL7 ENSGALG00000035252 930.00 3962.59 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
48. RPL8 ENSGALG00000016232 927.00 3949.81 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
49. RPS27A ENSGALG00000036790 917.00 3907.20 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
50. RPS23 ENSGALG00000015617 907.00 3864.59 ribosomal protein S23
51. RPS3A ENSGALG00000010077 897.00 3821.98 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
52. RPS16 ENSGALG00000026490 895.00 3813.46 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
53. RPL27 ENSGALG00000002837 888.00 3783.63 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
54. RPL36AL ENSGALG00000004952 845.00 3600.42 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
55. MT-ND5 MT-ND5 811.00 3455.55
56. NME2 ENSGALG00000002932 806.00 3434.24 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
57. RPL21 ENSGALG00000027035 771.00 3285.11 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
58. MT-ND1 MT-ND1 764.00 3255.29
59. RPL14 ENSGALG00000043379 756.00 3221.20 ribosomal protein L14
60. TCEB3 ENSGALG00000034625 736.00 3135.99 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
61. RPS25 ENSGALG00000007699 726.00 3093.38 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
62. PRDX1 ENSGALG00000010243 724.00 3084.85 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
63. CIRBP ENSGALG00000030918 716.00 3050.77 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
64. RPS17 ENSGALG00000002157 716.00 3050.77 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
65. ENSGALG00000028992 ENSGALG00000028992 714.00 3042.25
66. RPL5 ENSGALG00000005922 707.00 3012.42 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
67. RPL10A ENSGALG00000002644 704.00 2999.64 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
68. UBB ENSGALG00000004509 704.00 2999.64 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
69. GNB2L1 ENSGALG00000000122 697.00 2969.81 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
70. MT-ND4 MT-ND4 687.00 2927.20
71. ANP32B ENSGALG00000037483 674.00 2871.81 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
72. RPL23 ENSGALG00000001634 669.00 2850.51 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
73. RPS24 ENSGALG00000004871 657.00 2799.38 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
74. RPS13 ENSGALG00000006096 645.00 2748.25 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
75. LDHB ENSGALG00000035836 637.00 2714.16 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
76. RPL37A ENSGALG00000011472 620.00 2641.73 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
77. FTH FTH 583.00 2484.08
78. RPL37 ENSGALG00000014833 568.00 2420.16 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
79. RPS11 ENSGALG00000017299 560.00 2386.08 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
80. ALDOC ENSGALG00000026077 543.00 2313.64 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
81. RPS3 ENSGALG00000017330 543.00 2313.64 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
82. ENO1 ENSGALG00000002377 535.00 2279.55 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
83. MDK ENSGALG00000008367 511.00 2177.29 midkine [Source:NCBI gene;Acc:423196]
84. STMN1 ENSGALG00000001475 496.00 2113.38 stathmin 1 [Source:NCBI gene;Acc:396057]
85. EEF1D 493.00 2100.60 eukaryotic translation elongation factor 1 delta, transcript variant X13
86. RPL31 ENSGALG00000016775 493.00 2100.60 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
87. MT-CYB MT-CYB 486.00 2070.77
88. RPS20 ENSGALG00000014432 483.00 2057.99 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
89. EIF5A2 ENSGALG00000009309 476.00 2028.16 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
90. RAN ENSGALG00000002569 471.00 2006.86 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
91. MT-ND6 MT-ND6 461.00 1964.25
92. SEC61G ENSGALG00000037863 436.00 1857.73 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
93. RPS6 ENSGALG00000015082 434.00 1849.21 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
94. ATP5G3 426.00 1815.12 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
95. MT-CO1 MT-CO1 424.00 1806.60
96. CRHOA CRHOA 416.00 1772.51
97. ZNF593 ENSGALG00000000542 399.00 1700.08 zinc finger protein 593 [Source:NCBI gene;Acc:419549]
98. ENSGALG00000028649 ENSGALG00000028649 394.00 1678.77
99. EIF1 ENSGALG00000028517 384.00 1636.17 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
100. CHCHD2 ENSGALG00000002495 367.00 1563.73 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA