Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s75.

Sample reads: 124,237. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 5008.01 40310.12
2. MT-CO3 MT-CO3 4611.69 37120.09
3. MT-ND5 MT-ND5 3972.18 31972.59
4. MT-CYB MT-CYB 2296.84 18487.56
5. MT-ND1 MT-ND1 2017.61 16240.01
6. MT-CO1 MT-CO1 1972.58 15877.55
7. GAPDH ENSGALG00000014442 1909.53 15370.06 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
8. gga-mir-3527 gga-mir-3527 1896.02 15261.31
9. MT-ND4 MT-ND4 1666.33 13412.51
10. gga-mir-3533 ENSGALG00000027736 1441.15 11600.00 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. PPIA ENSGALG00000028600 1355.58 10911.24 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
12. EEF1A EEF1A 1233.99 9932.55
13. MT-ND3 MT-ND3 950.26 7648.77
14. NME2 ENSGALG00000002932 729.58 5872.48 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPS23 ENSGALG00000015617 567.45 4567.48 ribosomal protein S23
16. ENO1 ENSGALG00000002377 562.95 4531.26 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
17. RPS3 ENSGALG00000017330 558.45 4495.04 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
18. RPL23 ENSGALG00000001634 486.39 3915.02 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
19. RPL18A 477.38 3842.49 ribosomal protein L18a
20. RPL5 ENSGALG00000005922 477.38 3842.49 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
21. ANP32B ENSGALG00000037483 454.86 3661.23 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
22. ATP6V0C ENSGALG00000009229 454.86 3661.23 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
23. MDK ENSGALG00000008367 454.86 3661.23 midkine [Source:NCBI gene;Acc:423196]
24. RPS6 ENSGALG00000015082 450.36 3625.01 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
25. RPS7 ENSGALG00000016392 423.34 3407.52 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
26. EIF4G2 ENSGALG00000005587 409.83 3298.77 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
27. RPL7 ENSGALG00000035252 400.82 3226.25 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
28. ENSGALG00000018384 ENSGALG00000018384 387.31 3117.51
29. ENSGALG00000018386 ENSGALG00000018386 382.81 3081.29
30. RPL7A ENSGALG00000003197 378.30 3044.99 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
31. RPL8 ENSGALG00000016232 369.30 2972.54 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
32. CIRBP ENSGALG00000030918 364.79 2936.24 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
33. MT-ND2 MT-ND2 364.79 2936.24
34. RPL15 ENSGALG00000011290 360.29 2900.02 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
35. EEF1B2 ENSGALG00000008590 355.78 2863.72 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
36. RPL35A ENSGALG00000007611, ENSGALG00000041230 346.78 2791.28 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
37. RPS10 ENSGALG00000002813 342.27 2754.98 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
38. RPL27A ENSGALG00000005948 337.77 2718.75 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
39. MIF ENSGALG00000006326 328.76 2646.23 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
40. RPL31 ENSGALG00000016775 319.76 2573.79 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
41. RPS11 ENSGALG00000017299 319.76 2573.79 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
42. ATP5G3 315.25 2537.49 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
43. LDHB ENSGALG00000035836 301.74 2428.74 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
44. RPL26 RPL26 301.74 2428.74
45. RPS4 RPS4 297.24 2392.52
46. RPS27A ENSGALG00000036790 288.23 2320.00 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
47. RPL27 ENSGALG00000002837 283.73 2283.78 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
48. RPL36 ENSGALG00000000474 283.73 2283.78 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
49. CRHOA CRHOA 274.72 2211.26
50. RPS16 ENSGALG00000026490 274.72 2211.26 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
51. HNRNPA3 ENSGALG00000009250 270.22 2175.04 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
52. MEIS2 ENSGALG00000039118 270.22 2175.04 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
53. RAN ENSGALG00000002569 256.71 2066.29 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
54. RPS12 ENSGALG00000013990 252.20 2029.99 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
55. RPS15 ENSGALG00000015195 252.20 2029.99 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
56. H3-IX H3-IX 247.70 1993.77
57. RPL23A ENSGALG00000003966 247.70 1993.77 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
58. STMN1 ENSGALG00000001475 247.70 1993.77 stathmin 1 [Source:NCBI gene;Acc:396057]
59. TPT1 ENSGALG00000028872 247.70 1993.77 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
60. ATP6V1G1 ENSGALG00000007190 243.19 1957.47 ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
61. ENSGALG00000002696 ENSGALG00000002696 243.19 1957.47
62. HMGN5 ENSGALG00000007131 238.69 1921.25 high mobility group nucleosome binding domain 5, transcript variant X1
63. RPL29 ENSGALG00000026978 238.69 1921.25 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
64. NDUFB9 ENSGALG00000042242 229.68 1848.72 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
65. EIF5A2 ENSGALG00000009309 220.68 1776.28 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
66. ERH ENSGALG00000017384 220.68 1776.28 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
67. RPL14 ENSGALG00000043379 220.68 1776.28 ribosomal protein L14
68. RPS21 ENSGALG00000005338 220.68 1776.28 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
69. ENSGALG00000028992 ENSGALG00000028992 216.17 1739.98
70. FKBP4 ENSGALG00000014331 216.17 1739.98 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
71. IGF2BP3 ENSGALG00000010961 211.67 1703.76 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
72. TCEB3 ENSGALG00000034625 211.67 1703.76 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
73. RPL21 ENSGALG00000027035 207.17 1667.54 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
74. RPS3A ENSGALG00000010077 207.17 1667.54 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
75. SNRPG ENSGALG00000028409 207.17 1667.54 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
76. EIF1 ENSGALG00000028517 202.66 1631.24 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
77. EIF3F ENSGALG00000005326 202.66 1631.24 eukaryotic translation initiation factor 3 subunit F
78. SLC25A6_1 ENSGALG00000016691 202.66 1631.24 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
79. EEF1D 198.16 1595.02 eukaryotic translation elongation factor 1 delta, transcript variant X13
80. RPL6 ENSGALG00000004818 193.65 1558.71 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
81. RPS29 ENSGALG00000012229 193.65 1558.71 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
82. RPSA 193.65 1558.71 ribosomal protein SA
83. SLC25A6 ENSGALG00000016691 193.65 1558.71 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
84. RPL38 ENSGALG00000001465 189.15 1522.49 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
85. RPS24 ENSGALG00000004871 189.15 1522.49 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
86. TMSB4X ENSGALG00000026383 189.15 1522.49 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
87. PGK1 ENSGALG00000007936 184.65 1486.27 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
88. TXN ENSGALG00000015704 184.65 1486.27 thioredoxin [Source:NCBI gene;Acc:396437]
89. RPS14 ENSGALG00000004588 180.14 1449.97 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
90. RPS20 ENSGALG00000014432 180.14 1449.97 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
91. YWHAZ ENSGALG00000031387 180.14 1449.97 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
92. KPNA2 ENSGALG00000003584 175.64 1413.75 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
93. RPL37 ENSGALG00000014833 175.64 1413.75 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
94. ARF4 ENSGALG00000005622 171.14 1377.53 ADP ribosylation factor 4 [Source:HGNC Symbol;Acc:HGNC:655]
95. HBE 171.14 1377.53 hemoglobin subunit epsilon
96. NDUFAB1 ENSGALG00000006073 171.14 1377.53 NADH:ubiquinone oxidoreductase subunit AB1 [Source:HGNC Symbol;Acc:HGNC:7694]
97. RPL32 ENSGALG00000027142 171.14 1377.53 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
98. RPS8 ENSGALG00000010124 171.14 1377.53 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
99. BTF3L4 ENSGALG00000010570 166.63 1341.23 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
100. PRPF8 ENSGALG00000002943 166.63 1341.23 pre-mRNA processing factor 8 [Source:HGNC Symbol;Acc:HGNC:17340]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA