Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s74.

Sample reads: 124,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 4135.38 33286.03
2. MT-CO3 MT-CO3 3874.85 31189.01
3. MT-ND5 MT-ND5 3672.60 29561.08
4. GAPDH ENSGALG00000014442 2502.48 20142.68 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
5. MT-ND1 MT-ND1 1890.00 15212.77
6. MT-CYB MT-CYB 1828.30 14716.15
7. MT-ND4 MT-ND4 1677.46 13502.02
8. gga-mir-3533 ENSGALG00000027736 1455.78 11717.70 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. EEF1A EEF1A 1451.21 11680.92
10. gga-mir-3527 gga-mir-3527 1418.07 11414.17
11. MT-CO1 MT-CO1 1394.08 11221.07
12. PPIA ENSGALG00000028600 1186.11 9547.10 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
13. MT-ND3 MT-ND3 954.14 7679.96
14. RPS23 ENSGALG00000015617 780.46 6281.99 ribosomal protein S23
15. RPL5 ENSGALG00000005922 777.03 6254.38 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. ENO1 ENSGALG00000002377 593.05 4773.51 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
17. RPL15 ENSGALG00000011290 553.06 4451.63 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
18. RPS6 ENSGALG00000015082 530.21 4267.71 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
19. NME2 ENSGALG00000002932 526.78 4240.10 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
20. EIF4G2 ENSGALG00000005587 510.78 4111.31 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
21. RPL8 ENSGALG00000016232 507.35 4083.70 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
22. ATP6V0C ENSGALG00000009229 503.92 4056.10 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
23. ENSGALG00000002696 ENSGALG00000002696 475.36 3826.21
24. RPS7 ENSGALG00000016392 470.79 3789.43 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
25. RPL7A ENSGALG00000003197 461.65 3715.86 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
26. MDK ENSGALG00000008367 452.50 3642.21 midkine [Source:NCBI gene;Acc:423196]
27. RPL26 RPL26 419.37 3375.55
28. RPL7 ENSGALG00000035252 410.22 3301.90 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
29. RPS3 ENSGALG00000017330 406.80 3274.37 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
30. RPL23 ENSGALG00000001634 401.08 3228.33 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
31. RPL27A ENSGALG00000005948 386.23 3108.80 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
32. STMN1 ENSGALG00000001475 383.94 3090.37 stathmin 1 [Source:NCBI gene;Acc:396057]
33. RPS4 RPS4 381.66 3072.01
34. FKBP4 ENSGALG00000014331 378.23 3044.41 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
35. RPS10 ENSGALG00000002813 362.23 2915.62 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
36. ENSGALG00000018386 ENSGALG00000018386 358.80 2888.01
37. RPL21 ENSGALG00000027035 349.66 2814.44 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
38. CIRBP ENSGALG00000030918 345.09 2777.66 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
39. MIF ENSGALG00000006326 345.09 2777.66 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
40. RPL18A 343.95 2768.48 ribosomal protein L18a
41. RPL31 ENSGALG00000016775 337.09 2713.27 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
42. ENSGALG00000018384 ENSGALG00000018384 308.53 2483.38
43. RPS20 ENSGALG00000014432 301.67 2428.17 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
44. EIF1 ENSGALG00000028517 300.53 2418.99 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
45. EEF1B2 ENSGALG00000008590 294.81 2372.95 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
46. RPL4 ENSGALG00000007711 293.67 2363.78 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
47. H3-IX H3-IX 283.39 2281.03
48. SNRPG ENSGALG00000028409 282.24 2271.77 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
49. ATP5G3 281.10 2262.60 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
50. MT-ND2 MT-ND2 278.82 2244.25
51. RPS11 ENSGALG00000017299 277.67 2234.99 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
52. RPS12 ENSGALG00000013990 273.10 2198.21 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
53. LDHB ENSGALG00000035836 263.96 2124.64 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
54. TMSB4X ENSGALG00000026383 254.82 2051.07 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
55. RPS14 ENSGALG00000004588 250.25 2014.28 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
56. CRHOA CRHOA 247.96 1995.85
57. RPS16 ENSGALG00000026490 247.96 1995.85 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
58. RPL35A ENSGALG00000007611, ENSGALG00000041230 245.68 1977.50 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
59. RPS24 ENSGALG00000004871 239.96 1931.46 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
60. RPS27A ENSGALG00000036790 237.68 1913.11 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
61. ENSGALG00000028992 ENSGALG00000028992 235.39 1894.67
62. SLC25A6_1 ENSGALG00000016691 233.11 1876.32 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
63. ERH ENSGALG00000017384 231.97 1867.15 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
64. RPS29 ENSGALG00000012229 230.82 1857.89 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
65. RPL36 ENSGALG00000000474 229.68 1848.71 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
66. EIF3F ENSGALG00000005326 227.39 1830.28 eukaryotic translation initiation factor 3 subunit F
67. RPL32 ENSGALG00000027142 225.11 1811.93 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
68. RPLP1 ENSGALG00000030878 225.11 1811.93 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
69. MEIS2 ENSGALG00000039118 223.97 1802.75 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
70. NONO ENSGALG00000005507 223.97 1802.75 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
71. BTF3L4 ENSGALG00000010570 222.82 1793.50 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
72. NDUFB9 ENSGALG00000042242 219.40 1765.97 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
73. RPL13 ENSGALG00000006179 218.25 1756.71 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
74. RPL12 ENSGALG00000008806 217.11 1747.54 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
75. KPNA2 ENSGALG00000003584 212.54 1710.75 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
76. PGK1 ENSGALG00000007936 209.11 1683.14 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
77. RPS8 ENSGALG00000010124 209.11 1683.14 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
78. ANP32B ENSGALG00000037483 206.83 1664.79 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
79. HMGN2 HMGN2 206.83 1664.79
80. RPL10A ENSGALG00000002644 206.83 1664.79 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
81. EIF5A2 ENSGALG00000009309 205.68 1655.54 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
82. RPL23A ENSGALG00000003966 203.40 1637.18 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
83. COX7C ENSGALG00000027963 202.26 1628.01 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
84. RPL37A ENSGALG00000011472 202.26 1628.01 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
85. RPS15A ENSGALG00000006771 202.26 1628.01 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
86. RPL27 ENSGALG00000002837 201.11 1618.75 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
87. RPSA 201.11 1618.75 ribosomal protein SA
88. TXN ENSGALG00000015704 201.11 1618.75 thioredoxin [Source:NCBI gene;Acc:396437]
89. IGF2BP3 ENSGALG00000010961 198.83 1600.40 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
90. RPL14 ENSGALG00000043379 198.83 1600.40 ribosomal protein L14
91. HNRNPDL ENSGALG00000023199 195.40 1572.79 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
92. RPL6 ENSGALG00000004818 191.97 1545.18 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
93. RPL38 ENSGALG00000001465 190.83 1536.01 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
94. HMGN5 ENSGALG00000007131 189.69 1526.83 high mobility group nucleosome binding domain 5, transcript variant X1
95. RPL37 ENSGALG00000014833 189.69 1526.83 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
96. RAN ENSGALG00000002569 186.26 1499.22 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
97. SNRPE ENSGALG00000000137 186.26 1499.22 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
98. EEF1D 185.12 1490.05 eukaryotic translation elongation factor 1 delta, transcript variant X13
99. RPS21 ENSGALG00000005338 185.12 1490.05 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
100. HNRNPA3 ENSGALG00000009250 180.54 1453.18 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA